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- # NumPy static imports for Cython
- #
- # If any of the PyArray_* functions are called, import_array must be
- # called first.
- #
- # This also defines backwards-compatibility buffer acquisition
- # code for use in Python 2.x (or Python <= 2.5 when NumPy starts
- # implementing PEP-3118 directly).
- #
- # Because of laziness, the format string of the buffer is statically
- # allocated. Increase the size if this is not enough, or submit a
- # patch to do this properly.
- #
- # Author: Dag Sverre Seljebotn
- #
- DEF _buffer_format_string_len = 255
- cimport cpython.buffer as pybuf
- from cpython.ref cimport Py_INCREF
- from cpython.mem cimport PyObject_Malloc, PyObject_Free
- from cpython.object cimport PyObject, PyTypeObject
- from cpython.type cimport type
- cimport libc.stdio as stdio
- cdef extern from "Python.h":
- ctypedef int Py_intptr_t
- cdef extern from "numpy/arrayobject.h":
- ctypedef Py_intptr_t npy_intp
- ctypedef size_t npy_uintp
- cdef enum NPY_TYPES:
- NPY_BOOL
- NPY_BYTE
- NPY_UBYTE
- NPY_SHORT
- NPY_USHORT
- NPY_INT
- NPY_UINT
- NPY_LONG
- NPY_ULONG
- NPY_LONGLONG
- NPY_ULONGLONG
- NPY_FLOAT
- NPY_DOUBLE
- NPY_LONGDOUBLE
- NPY_CFLOAT
- NPY_CDOUBLE
- NPY_CLONGDOUBLE
- NPY_OBJECT
- NPY_STRING
- NPY_UNICODE
- NPY_VOID
- NPY_DATETIME
- NPY_TIMEDELTA
- NPY_NTYPES
- NPY_NOTYPE
- NPY_INT8
- NPY_INT16
- NPY_INT32
- NPY_INT64
- NPY_INT128
- NPY_INT256
- NPY_UINT8
- NPY_UINT16
- NPY_UINT32
- NPY_UINT64
- NPY_UINT128
- NPY_UINT256
- NPY_FLOAT16
- NPY_FLOAT32
- NPY_FLOAT64
- NPY_FLOAT80
- NPY_FLOAT96
- NPY_FLOAT128
- NPY_FLOAT256
- NPY_COMPLEX32
- NPY_COMPLEX64
- NPY_COMPLEX128
- NPY_COMPLEX160
- NPY_COMPLEX192
- NPY_COMPLEX256
- NPY_COMPLEX512
- NPY_INTP
- ctypedef enum NPY_ORDER:
- NPY_ANYORDER
- NPY_CORDER
- NPY_FORTRANORDER
- NPY_KEEPORDER
- ctypedef enum NPY_CASTING:
- NPY_NO_CASTING
- NPY_EQUIV_CASTING
- NPY_SAFE_CASTING
- NPY_SAME_KIND_CASTING
- NPY_UNSAFE_CASTING
- ctypedef enum NPY_CLIPMODE:
- NPY_CLIP
- NPY_WRAP
- NPY_RAISE
- ctypedef enum NPY_SCALARKIND:
- NPY_NOSCALAR,
- NPY_BOOL_SCALAR,
- NPY_INTPOS_SCALAR,
- NPY_INTNEG_SCALAR,
- NPY_FLOAT_SCALAR,
- NPY_COMPLEX_SCALAR,
- NPY_OBJECT_SCALAR
- ctypedef enum NPY_SORTKIND:
- NPY_QUICKSORT
- NPY_HEAPSORT
- NPY_MERGESORT
- ctypedef enum NPY_SEARCHSIDE:
- NPY_SEARCHLEFT
- NPY_SEARCHRIGHT
- enum:
- # DEPRECATED since NumPy 1.7 ! Do not use in new code!
- NPY_C_CONTIGUOUS
- NPY_F_CONTIGUOUS
- NPY_CONTIGUOUS
- NPY_FORTRAN
- NPY_OWNDATA
- NPY_FORCECAST
- NPY_ENSURECOPY
- NPY_ENSUREARRAY
- NPY_ELEMENTSTRIDES
- NPY_ALIGNED
- NPY_NOTSWAPPED
- NPY_WRITEABLE
- NPY_UPDATEIFCOPY
- NPY_ARR_HAS_DESCR
- NPY_BEHAVED
- NPY_BEHAVED_NS
- NPY_CARRAY
- NPY_CARRAY_RO
- NPY_FARRAY
- NPY_FARRAY_RO
- NPY_DEFAULT
- NPY_IN_ARRAY
- NPY_OUT_ARRAY
- NPY_INOUT_ARRAY
- NPY_IN_FARRAY
- NPY_OUT_FARRAY
- NPY_INOUT_FARRAY
- NPY_UPDATE_ALL
- enum:
- # Added in NumPy 1.7 to replace the deprecated enums above.
- NPY_ARRAY_C_CONTIGUOUS
- NPY_ARRAY_F_CONTIGUOUS
- NPY_ARRAY_OWNDATA
- NPY_ARRAY_FORCECAST
- NPY_ARRAY_ENSURECOPY
- NPY_ARRAY_ENSUREARRAY
- NPY_ARRAY_ELEMENTSTRIDES
- NPY_ARRAY_ALIGNED
- NPY_ARRAY_NOTSWAPPED
- NPY_ARRAY_WRITEABLE
- NPY_ARRAY_UPDATEIFCOPY
- NPY_ARRAY_BEHAVED
- NPY_ARRAY_BEHAVED_NS
- NPY_ARRAY_CARRAY
- NPY_ARRAY_CARRAY_RO
- NPY_ARRAY_FARRAY
- NPY_ARRAY_FARRAY_RO
- NPY_ARRAY_DEFAULT
- NPY_ARRAY_IN_ARRAY
- NPY_ARRAY_OUT_ARRAY
- NPY_ARRAY_INOUT_ARRAY
- NPY_ARRAY_IN_FARRAY
- NPY_ARRAY_OUT_FARRAY
- NPY_ARRAY_INOUT_FARRAY
- NPY_ARRAY_UPDATE_ALL
- cdef enum:
- NPY_MAXDIMS
- npy_intp NPY_MAX_ELSIZE
- ctypedef void (*PyArray_VectorUnaryFunc)(void *, void *, npy_intp, void *, void *)
- ctypedef struct PyArray_ArrayDescr:
- # shape is a tuple, but Cython doesn't support "tuple shape"
- # inside a non-PyObject declaration, so we have to declare it
- # as just a PyObject*.
- PyObject* shape
- ctypedef struct PyArray_Descr:
- pass
- ctypedef class numpy.dtype [object PyArray_Descr, check_size ignore]:
- # Use PyDataType_* macros when possible, however there are no macros
- # for accessing some of the fields, so some are defined.
- cdef PyTypeObject* typeobj
- cdef char kind
- cdef char type
- # Numpy sometimes mutates this without warning (e.g. it'll
- # sometimes change "|" to "<" in shared dtype objects on
- # little-endian machines). If this matters to you, use
- # PyArray_IsNativeByteOrder(dtype.byteorder) instead of
- # directly accessing this field.
- cdef char byteorder
- cdef char flags
- cdef int type_num
- cdef int itemsize "elsize"
- cdef int alignment
- cdef dict fields
- cdef tuple names
- # Use PyDataType_HASSUBARRAY to test whether this field is
- # valid (the pointer can be NULL). Most users should access
- # this field via the inline helper method PyDataType_SHAPE.
- cdef PyArray_ArrayDescr* subarray
- ctypedef extern class numpy.flatiter [object PyArrayIterObject]:
- # Use through macros
- pass
- ctypedef extern class numpy.broadcast [object PyArrayMultiIterObject]:
- # Use through macros
- pass
- ctypedef struct PyArrayObject:
- # For use in situations where ndarray can't replace PyArrayObject*,
- # like PyArrayObject**.
- pass
- ctypedef class numpy.ndarray [object PyArrayObject, check_size ignore]:
- cdef __cythonbufferdefaults__ = {"mode": "strided"}
- cdef:
- # Only taking a few of the most commonly used and stable fields.
- # One should use PyArray_* macros instead to access the C fields.
- char *data
- int ndim "nd"
- npy_intp *shape "dimensions"
- npy_intp *strides
- dtype descr # deprecated since NumPy 1.7 !
- PyObject* base
- # Note: This syntax (function definition in pxd files) is an
- # experimental exception made for __getbuffer__ and __releasebuffer__
- # -- the details of this may change.
- def __getbuffer__(ndarray self, Py_buffer* info, int flags):
- # This implementation of getbuffer is geared towards Cython
- # requirements, and does not yet fulfill the PEP.
- # In particular strided access is always provided regardless
- # of flags
- cdef int i, ndim
- cdef int endian_detector = 1
- cdef bint little_endian = ((<char*>&endian_detector)[0] != 0)
- ndim = PyArray_NDIM(self)
- if ((flags & pybuf.PyBUF_C_CONTIGUOUS == pybuf.PyBUF_C_CONTIGUOUS)
- and not PyArray_CHKFLAGS(self, NPY_ARRAY_C_CONTIGUOUS)):
- raise ValueError(u"ndarray is not C contiguous")
- if ((flags & pybuf.PyBUF_F_CONTIGUOUS == pybuf.PyBUF_F_CONTIGUOUS)
- and not PyArray_CHKFLAGS(self, NPY_ARRAY_F_CONTIGUOUS)):
- raise ValueError(u"ndarray is not Fortran contiguous")
- info.buf = PyArray_DATA(self)
- info.ndim = ndim
- if sizeof(npy_intp) != sizeof(Py_ssize_t):
- # Allocate new buffer for strides and shape info.
- # This is allocated as one block, strides first.
- info.strides = <Py_ssize_t*>PyObject_Malloc(sizeof(Py_ssize_t) * 2 * <size_t>ndim)
- info.shape = info.strides + ndim
- for i in range(ndim):
- info.strides[i] = PyArray_STRIDES(self)[i]
- info.shape[i] = PyArray_DIMS(self)[i]
- else:
- info.strides = <Py_ssize_t*>PyArray_STRIDES(self)
- info.shape = <Py_ssize_t*>PyArray_DIMS(self)
- info.suboffsets = NULL
- info.itemsize = PyArray_ITEMSIZE(self)
- info.readonly = not PyArray_ISWRITEABLE(self)
- cdef int t
- cdef char* f = NULL
- cdef dtype descr = <dtype>PyArray_DESCR(self)
- cdef int offset
- info.obj = self
- if not PyDataType_HASFIELDS(descr):
- t = descr.type_num
- if ((descr.byteorder == c'>' and little_endian) or
- (descr.byteorder == c'<' and not little_endian)):
- raise ValueError(u"Non-native byte order not supported")
- if t == NPY_BYTE: f = "b"
- elif t == NPY_UBYTE: f = "B"
- elif t == NPY_SHORT: f = "h"
- elif t == NPY_USHORT: f = "H"
- elif t == NPY_INT: f = "i"
- elif t == NPY_UINT: f = "I"
- elif t == NPY_LONG: f = "l"
- elif t == NPY_ULONG: f = "L"
- elif t == NPY_LONGLONG: f = "q"
- elif t == NPY_ULONGLONG: f = "Q"
- elif t == NPY_FLOAT: f = "f"
- elif t == NPY_DOUBLE: f = "d"
- elif t == NPY_LONGDOUBLE: f = "g"
- elif t == NPY_CFLOAT: f = "Zf"
- elif t == NPY_CDOUBLE: f = "Zd"
- elif t == NPY_CLONGDOUBLE: f = "Zg"
- elif t == NPY_OBJECT: f = "O"
- else:
- raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t)
- info.format = f
- return
- else:
- info.format = <char*>PyObject_Malloc(_buffer_format_string_len)
- info.format[0] = c'^' # Native data types, manual alignment
- offset = 0
- f = _util_dtypestring(descr, info.format + 1,
- info.format + _buffer_format_string_len,
- &offset)
- f[0] = c'\0' # Terminate format string
- def __releasebuffer__(ndarray self, Py_buffer* info):
- if PyArray_HASFIELDS(self):
- PyObject_Free(info.format)
- if sizeof(npy_intp) != sizeof(Py_ssize_t):
- PyObject_Free(info.strides)
- # info.shape was stored after info.strides in the same block
- ctypedef unsigned char npy_bool
- ctypedef signed char npy_byte
- ctypedef signed short npy_short
- ctypedef signed int npy_int
- ctypedef signed long npy_long
- ctypedef signed long long npy_longlong
- ctypedef unsigned char npy_ubyte
- ctypedef unsigned short npy_ushort
- ctypedef unsigned int npy_uint
- ctypedef unsigned long npy_ulong
- ctypedef unsigned long long npy_ulonglong
- ctypedef float npy_float
- ctypedef double npy_double
- ctypedef long double npy_longdouble
- ctypedef signed char npy_int8
- ctypedef signed short npy_int16
- ctypedef signed int npy_int32
- ctypedef signed long long npy_int64
- ctypedef signed long long npy_int96
- ctypedef signed long long npy_int128
- ctypedef unsigned char npy_uint8
- ctypedef unsigned short npy_uint16
- ctypedef unsigned int npy_uint32
- ctypedef unsigned long long npy_uint64
- ctypedef unsigned long long npy_uint96
- ctypedef unsigned long long npy_uint128
- ctypedef float npy_float32
- ctypedef double npy_float64
- ctypedef long double npy_float80
- ctypedef long double npy_float96
- ctypedef long double npy_float128
- ctypedef struct npy_cfloat:
- double real
- double imag
- ctypedef struct npy_cdouble:
- double real
- double imag
- ctypedef struct npy_clongdouble:
- long double real
- long double imag
- ctypedef struct npy_complex64:
- float real
- float imag
- ctypedef struct npy_complex128:
- double real
- double imag
- ctypedef struct npy_complex160:
- long double real
- long double imag
- ctypedef struct npy_complex192:
- long double real
- long double imag
- ctypedef struct npy_complex256:
- long double real
- long double imag
- ctypedef struct PyArray_Dims:
- npy_intp *ptr
- int len
- int _import_array() except -1
- #
- # Macros from ndarrayobject.h
- #
- bint PyArray_CHKFLAGS(ndarray m, int flags)
- bint PyArray_IS_C_CONTIGUOUS(ndarray arr)
- bint PyArray_IS_F_CONTIGUOUS(ndarray arr)
- bint PyArray_ISCONTIGUOUS(ndarray m)
- bint PyArray_ISWRITEABLE(ndarray m)
- bint PyArray_ISALIGNED(ndarray m)
- int PyArray_NDIM(ndarray)
- bint PyArray_ISONESEGMENT(ndarray)
- bint PyArray_ISFORTRAN(ndarray)
- int PyArray_FORTRANIF(ndarray)
- void* PyArray_DATA(ndarray)
- char* PyArray_BYTES(ndarray)
- npy_intp* PyArray_DIMS(ndarray)
- npy_intp* PyArray_STRIDES(ndarray)
- npy_intp PyArray_DIM(ndarray, size_t)
- npy_intp PyArray_STRIDE(ndarray, size_t)
- PyObject *PyArray_BASE(ndarray) # returns borrowed reference!
- PyArray_Descr *PyArray_DESCR(ndarray) # returns borrowed reference to dtype!
- int PyArray_FLAGS(ndarray)
- npy_intp PyArray_ITEMSIZE(ndarray)
- int PyArray_TYPE(ndarray arr)
- object PyArray_GETITEM(ndarray arr, void *itemptr)
- int PyArray_SETITEM(ndarray arr, void *itemptr, object obj)
- bint PyTypeNum_ISBOOL(int)
- bint PyTypeNum_ISUNSIGNED(int)
- bint PyTypeNum_ISSIGNED(int)
- bint PyTypeNum_ISINTEGER(int)
- bint PyTypeNum_ISFLOAT(int)
- bint PyTypeNum_ISNUMBER(int)
- bint PyTypeNum_ISSTRING(int)
- bint PyTypeNum_ISCOMPLEX(int)
- bint PyTypeNum_ISPYTHON(int)
- bint PyTypeNum_ISFLEXIBLE(int)
- bint PyTypeNum_ISUSERDEF(int)
- bint PyTypeNum_ISEXTENDED(int)
- bint PyTypeNum_ISOBJECT(int)
- bint PyDataType_ISBOOL(dtype)
- bint PyDataType_ISUNSIGNED(dtype)
- bint PyDataType_ISSIGNED(dtype)
- bint PyDataType_ISINTEGER(dtype)
- bint PyDataType_ISFLOAT(dtype)
- bint PyDataType_ISNUMBER(dtype)
- bint PyDataType_ISSTRING(dtype)
- bint PyDataType_ISCOMPLEX(dtype)
- bint PyDataType_ISPYTHON(dtype)
- bint PyDataType_ISFLEXIBLE(dtype)
- bint PyDataType_ISUSERDEF(dtype)
- bint PyDataType_ISEXTENDED(dtype)
- bint PyDataType_ISOBJECT(dtype)
- bint PyDataType_HASFIELDS(dtype)
- bint PyDataType_HASSUBARRAY(dtype)
- bint PyArray_ISBOOL(ndarray)
- bint PyArray_ISUNSIGNED(ndarray)
- bint PyArray_ISSIGNED(ndarray)
- bint PyArray_ISINTEGER(ndarray)
- bint PyArray_ISFLOAT(ndarray)
- bint PyArray_ISNUMBER(ndarray)
- bint PyArray_ISSTRING(ndarray)
- bint PyArray_ISCOMPLEX(ndarray)
- bint PyArray_ISPYTHON(ndarray)
- bint PyArray_ISFLEXIBLE(ndarray)
- bint PyArray_ISUSERDEF(ndarray)
- bint PyArray_ISEXTENDED(ndarray)
- bint PyArray_ISOBJECT(ndarray)
- bint PyArray_HASFIELDS(ndarray)
- bint PyArray_ISVARIABLE(ndarray)
- bint PyArray_SAFEALIGNEDCOPY(ndarray)
- bint PyArray_ISNBO(char) # works on ndarray.byteorder
- bint PyArray_IsNativeByteOrder(char) # works on ndarray.byteorder
- bint PyArray_ISNOTSWAPPED(ndarray)
- bint PyArray_ISBYTESWAPPED(ndarray)
- bint PyArray_FLAGSWAP(ndarray, int)
- bint PyArray_ISCARRAY(ndarray)
- bint PyArray_ISCARRAY_RO(ndarray)
- bint PyArray_ISFARRAY(ndarray)
- bint PyArray_ISFARRAY_RO(ndarray)
- bint PyArray_ISBEHAVED(ndarray)
- bint PyArray_ISBEHAVED_RO(ndarray)
- bint PyDataType_ISNOTSWAPPED(dtype)
- bint PyDataType_ISBYTESWAPPED(dtype)
- bint PyArray_DescrCheck(object)
- bint PyArray_Check(object)
- bint PyArray_CheckExact(object)
- # Cannot be supported due to out arg:
- # bint PyArray_HasArrayInterfaceType(object, dtype, object, object&)
- # bint PyArray_HasArrayInterface(op, out)
- bint PyArray_IsZeroDim(object)
- # Cannot be supported due to ## ## in macro:
- # bint PyArray_IsScalar(object, verbatim work)
- bint PyArray_CheckScalar(object)
- bint PyArray_IsPythonNumber(object)
- bint PyArray_IsPythonScalar(object)
- bint PyArray_IsAnyScalar(object)
- bint PyArray_CheckAnyScalar(object)
- ndarray PyArray_GETCONTIGUOUS(ndarray)
- bint PyArray_SAMESHAPE(ndarray, ndarray)
- npy_intp PyArray_SIZE(ndarray)
- npy_intp PyArray_NBYTES(ndarray)
- object PyArray_FROM_O(object)
- object PyArray_FROM_OF(object m, int flags)
- object PyArray_FROM_OT(object m, int type)
- object PyArray_FROM_OTF(object m, int type, int flags)
- object PyArray_FROMANY(object m, int type, int min, int max, int flags)
- object PyArray_ZEROS(int nd, npy_intp* dims, int type, int fortran)
- object PyArray_EMPTY(int nd, npy_intp* dims, int type, int fortran)
- void PyArray_FILLWBYTE(object, int val)
- npy_intp PyArray_REFCOUNT(object)
- object PyArray_ContiguousFromAny(op, int, int min_depth, int max_depth)
- unsigned char PyArray_EquivArrTypes(ndarray a1, ndarray a2)
- bint PyArray_EquivByteorders(int b1, int b2)
- object PyArray_SimpleNew(int nd, npy_intp* dims, int typenum)
- object PyArray_SimpleNewFromData(int nd, npy_intp* dims, int typenum, void* data)
- #object PyArray_SimpleNewFromDescr(int nd, npy_intp* dims, dtype descr)
- object PyArray_ToScalar(void* data, ndarray arr)
- void* PyArray_GETPTR1(ndarray m, npy_intp i)
- void* PyArray_GETPTR2(ndarray m, npy_intp i, npy_intp j)
- void* PyArray_GETPTR3(ndarray m, npy_intp i, npy_intp j, npy_intp k)
- void* PyArray_GETPTR4(ndarray m, npy_intp i, npy_intp j, npy_intp k, npy_intp l)
- void PyArray_XDECREF_ERR(ndarray)
- # Cannot be supported due to out arg
- # void PyArray_DESCR_REPLACE(descr)
- object PyArray_Copy(ndarray)
- object PyArray_FromObject(object op, int type, int min_depth, int max_depth)
- object PyArray_ContiguousFromObject(object op, int type, int min_depth, int max_depth)
- object PyArray_CopyFromObject(object op, int type, int min_depth, int max_depth)
- object PyArray_Cast(ndarray mp, int type_num)
- object PyArray_Take(ndarray ap, object items, int axis)
- object PyArray_Put(ndarray ap, object items, object values)
- void PyArray_ITER_RESET(flatiter it) nogil
- void PyArray_ITER_NEXT(flatiter it) nogil
- void PyArray_ITER_GOTO(flatiter it, npy_intp* destination) nogil
- void PyArray_ITER_GOTO1D(flatiter it, npy_intp ind) nogil
- void* PyArray_ITER_DATA(flatiter it) nogil
- bint PyArray_ITER_NOTDONE(flatiter it) nogil
- void PyArray_MultiIter_RESET(broadcast multi) nogil
- void PyArray_MultiIter_NEXT(broadcast multi) nogil
- void PyArray_MultiIter_GOTO(broadcast multi, npy_intp dest) nogil
- void PyArray_MultiIter_GOTO1D(broadcast multi, npy_intp ind) nogil
- void* PyArray_MultiIter_DATA(broadcast multi, npy_intp i) nogil
- void PyArray_MultiIter_NEXTi(broadcast multi, npy_intp i) nogil
- bint PyArray_MultiIter_NOTDONE(broadcast multi) nogil
- # Functions from __multiarray_api.h
- # Functions taking dtype and returning object/ndarray are disabled
- # for now as they steal dtype references. I'm conservative and disable
- # more than is probably needed until it can be checked further.
- int PyArray_SetNumericOps (object)
- object PyArray_GetNumericOps ()
- int PyArray_INCREF (ndarray)
- int PyArray_XDECREF (ndarray)
- void PyArray_SetStringFunction (object, int)
- dtype PyArray_DescrFromType (int)
- object PyArray_TypeObjectFromType (int)
- char * PyArray_Zero (ndarray)
- char * PyArray_One (ndarray)
- #object PyArray_CastToType (ndarray, dtype, int)
- int PyArray_CastTo (ndarray, ndarray)
- int PyArray_CastAnyTo (ndarray, ndarray)
- int PyArray_CanCastSafely (int, int)
- npy_bool PyArray_CanCastTo (dtype, dtype)
- int PyArray_ObjectType (object, int)
- dtype PyArray_DescrFromObject (object, dtype)
- #ndarray* PyArray_ConvertToCommonType (object, int *)
- dtype PyArray_DescrFromScalar (object)
- dtype PyArray_DescrFromTypeObject (object)
- npy_intp PyArray_Size (object)
- #object PyArray_Scalar (void *, dtype, object)
- #object PyArray_FromScalar (object, dtype)
- void PyArray_ScalarAsCtype (object, void *)
- #int PyArray_CastScalarToCtype (object, void *, dtype)
- #int PyArray_CastScalarDirect (object, dtype, void *, int)
- object PyArray_ScalarFromObject (object)
- #PyArray_VectorUnaryFunc * PyArray_GetCastFunc (dtype, int)
- object PyArray_FromDims (int, int *, int)
- #object PyArray_FromDimsAndDataAndDescr (int, int *, dtype, char *)
- #object PyArray_FromAny (object, dtype, int, int, int, object)
- object PyArray_EnsureArray (object)
- object PyArray_EnsureAnyArray (object)
- #object PyArray_FromFile (stdio.FILE *, dtype, npy_intp, char *)
- #object PyArray_FromString (char *, npy_intp, dtype, npy_intp, char *)
- #object PyArray_FromBuffer (object, dtype, npy_intp, npy_intp)
- #object PyArray_FromIter (object, dtype, npy_intp)
- object PyArray_Return (ndarray)
- #object PyArray_GetField (ndarray, dtype, int)
- #int PyArray_SetField (ndarray, dtype, int, object)
- object PyArray_Byteswap (ndarray, npy_bool)
- object PyArray_Resize (ndarray, PyArray_Dims *, int, NPY_ORDER)
- int PyArray_MoveInto (ndarray, ndarray)
- int PyArray_CopyInto (ndarray, ndarray)
- int PyArray_CopyAnyInto (ndarray, ndarray)
- int PyArray_CopyObject (ndarray, object)
- object PyArray_NewCopy (ndarray, NPY_ORDER)
- object PyArray_ToList (ndarray)
- object PyArray_ToString (ndarray, NPY_ORDER)
- int PyArray_ToFile (ndarray, stdio.FILE *, char *, char *)
- int PyArray_Dump (object, object, int)
- object PyArray_Dumps (object, int)
- int PyArray_ValidType (int)
- void PyArray_UpdateFlags (ndarray, int)
- object PyArray_New (type, int, npy_intp *, int, npy_intp *, void *, int, int, object)
- #object PyArray_NewFromDescr (type, dtype, int, npy_intp *, npy_intp *, void *, int, object)
- #dtype PyArray_DescrNew (dtype)
- dtype PyArray_DescrNewFromType (int)
- double PyArray_GetPriority (object, double)
- object PyArray_IterNew (object)
- object PyArray_MultiIterNew (int, ...)
- int PyArray_PyIntAsInt (object)
- npy_intp PyArray_PyIntAsIntp (object)
- int PyArray_Broadcast (broadcast)
- void PyArray_FillObjectArray (ndarray, object)
- int PyArray_FillWithScalar (ndarray, object)
- npy_bool PyArray_CheckStrides (int, int, npy_intp, npy_intp, npy_intp *, npy_intp *)
- dtype PyArray_DescrNewByteorder (dtype, char)
- object PyArray_IterAllButAxis (object, int *)
- #object PyArray_CheckFromAny (object, dtype, int, int, int, object)
- #object PyArray_FromArray (ndarray, dtype, int)
- object PyArray_FromInterface (object)
- object PyArray_FromStructInterface (object)
- #object PyArray_FromArrayAttr (object, dtype, object)
- #NPY_SCALARKIND PyArray_ScalarKind (int, ndarray*)
- int PyArray_CanCoerceScalar (int, int, NPY_SCALARKIND)
- object PyArray_NewFlagsObject (object)
- npy_bool PyArray_CanCastScalar (type, type)
- #int PyArray_CompareUCS4 (npy_ucs4 *, npy_ucs4 *, register size_t)
- int PyArray_RemoveSmallest (broadcast)
- int PyArray_ElementStrides (object)
- void PyArray_Item_INCREF (char *, dtype)
- void PyArray_Item_XDECREF (char *, dtype)
- object PyArray_FieldNames (object)
- object PyArray_Transpose (ndarray, PyArray_Dims *)
- object PyArray_TakeFrom (ndarray, object, int, ndarray, NPY_CLIPMODE)
- object PyArray_PutTo (ndarray, object, object, NPY_CLIPMODE)
- object PyArray_PutMask (ndarray, object, object)
- object PyArray_Repeat (ndarray, object, int)
- object PyArray_Choose (ndarray, object, ndarray, NPY_CLIPMODE)
- int PyArray_Sort (ndarray, int, NPY_SORTKIND)
- object PyArray_ArgSort (ndarray, int, NPY_SORTKIND)
- object PyArray_SearchSorted (ndarray, object, NPY_SEARCHSIDE)
- object PyArray_ArgMax (ndarray, int, ndarray)
- object PyArray_ArgMin (ndarray, int, ndarray)
- object PyArray_Reshape (ndarray, object)
- object PyArray_Newshape (ndarray, PyArray_Dims *, NPY_ORDER)
- object PyArray_Squeeze (ndarray)
- #object PyArray_View (ndarray, dtype, type)
- object PyArray_SwapAxes (ndarray, int, int)
- object PyArray_Max (ndarray, int, ndarray)
- object PyArray_Min (ndarray, int, ndarray)
- object PyArray_Ptp (ndarray, int, ndarray)
- object PyArray_Mean (ndarray, int, int, ndarray)
- object PyArray_Trace (ndarray, int, int, int, int, ndarray)
- object PyArray_Diagonal (ndarray, int, int, int)
- object PyArray_Clip (ndarray, object, object, ndarray)
- object PyArray_Conjugate (ndarray, ndarray)
- object PyArray_Nonzero (ndarray)
- object PyArray_Std (ndarray, int, int, ndarray, int)
- object PyArray_Sum (ndarray, int, int, ndarray)
- object PyArray_CumSum (ndarray, int, int, ndarray)
- object PyArray_Prod (ndarray, int, int, ndarray)
- object PyArray_CumProd (ndarray, int, int, ndarray)
- object PyArray_All (ndarray, int, ndarray)
- object PyArray_Any (ndarray, int, ndarray)
- object PyArray_Compress (ndarray, object, int, ndarray)
- object PyArray_Flatten (ndarray, NPY_ORDER)
- object PyArray_Ravel (ndarray, NPY_ORDER)
- npy_intp PyArray_MultiplyList (npy_intp *, int)
- int PyArray_MultiplyIntList (int *, int)
- void * PyArray_GetPtr (ndarray, npy_intp*)
- int PyArray_CompareLists (npy_intp *, npy_intp *, int)
- #int PyArray_AsCArray (object*, void *, npy_intp *, int, dtype)
- #int PyArray_As1D (object*, char **, int *, int)
- #int PyArray_As2D (object*, char ***, int *, int *, int)
- int PyArray_Free (object, void *)
- #int PyArray_Converter (object, object*)
- int PyArray_IntpFromSequence (object, npy_intp *, int)
- object PyArray_Concatenate (object, int)
- object PyArray_InnerProduct (object, object)
- object PyArray_MatrixProduct (object, object)
- object PyArray_CopyAndTranspose (object)
- object PyArray_Correlate (object, object, int)
- int PyArray_TypestrConvert (int, int)
- #int PyArray_DescrConverter (object, dtype*)
- #int PyArray_DescrConverter2 (object, dtype*)
- int PyArray_IntpConverter (object, PyArray_Dims *)
- #int PyArray_BufferConverter (object, chunk)
- int PyArray_AxisConverter (object, int *)
- int PyArray_BoolConverter (object, npy_bool *)
- int PyArray_ByteorderConverter (object, char *)
- int PyArray_OrderConverter (object, NPY_ORDER *)
- unsigned char PyArray_EquivTypes (dtype, dtype)
- #object PyArray_Zeros (int, npy_intp *, dtype, int)
- #object PyArray_Empty (int, npy_intp *, dtype, int)
- object PyArray_Where (object, object, object)
- object PyArray_Arange (double, double, double, int)
- #object PyArray_ArangeObj (object, object, object, dtype)
- int PyArray_SortkindConverter (object, NPY_SORTKIND *)
- object PyArray_LexSort (object, int)
- object PyArray_Round (ndarray, int, ndarray)
- unsigned char PyArray_EquivTypenums (int, int)
- int PyArray_RegisterDataType (dtype)
- int PyArray_RegisterCastFunc (dtype, int, PyArray_VectorUnaryFunc *)
- int PyArray_RegisterCanCast (dtype, int, NPY_SCALARKIND)
- #void PyArray_InitArrFuncs (PyArray_ArrFuncs *)
- object PyArray_IntTupleFromIntp (int, npy_intp *)
- int PyArray_TypeNumFromName (char *)
- int PyArray_ClipmodeConverter (object, NPY_CLIPMODE *)
- #int PyArray_OutputConverter (object, ndarray*)
- object PyArray_BroadcastToShape (object, npy_intp *, int)
- void _PyArray_SigintHandler (int)
- void* _PyArray_GetSigintBuf ()
- #int PyArray_DescrAlignConverter (object, dtype*)
- #int PyArray_DescrAlignConverter2 (object, dtype*)
- int PyArray_SearchsideConverter (object, void *)
- object PyArray_CheckAxis (ndarray, int *, int)
- npy_intp PyArray_OverflowMultiplyList (npy_intp *, int)
- int PyArray_CompareString (char *, char *, size_t)
- int PyArray_SetBaseObject(ndarray, base) # NOTE: steals a reference to base! Use "set_array_base()" instead.
- # Typedefs that matches the runtime dtype objects in
- # the numpy module.
- # The ones that are commented out needs an IFDEF function
- # in Cython to enable them only on the right systems.
- ctypedef npy_int8 int8_t
- ctypedef npy_int16 int16_t
- ctypedef npy_int32 int32_t
- ctypedef npy_int64 int64_t
- #ctypedef npy_int96 int96_t
- #ctypedef npy_int128 int128_t
- ctypedef npy_uint8 uint8_t
- ctypedef npy_uint16 uint16_t
- ctypedef npy_uint32 uint32_t
- ctypedef npy_uint64 uint64_t
- #ctypedef npy_uint96 uint96_t
- #ctypedef npy_uint128 uint128_t
- ctypedef npy_float32 float32_t
- ctypedef npy_float64 float64_t
- #ctypedef npy_float80 float80_t
- #ctypedef npy_float128 float128_t
- ctypedef float complex complex64_t
- ctypedef double complex complex128_t
- # The int types are mapped a bit surprising --
- # numpy.int corresponds to 'l' and numpy.long to 'q'
- ctypedef npy_long int_t
- ctypedef npy_longlong long_t
- ctypedef npy_longlong longlong_t
- ctypedef npy_ulong uint_t
- ctypedef npy_ulonglong ulong_t
- ctypedef npy_ulonglong ulonglong_t
- ctypedef npy_intp intp_t
- ctypedef npy_uintp uintp_t
- ctypedef npy_double float_t
- ctypedef npy_double double_t
- ctypedef npy_longdouble longdouble_t
- ctypedef npy_cfloat cfloat_t
- ctypedef npy_cdouble cdouble_t
- ctypedef npy_clongdouble clongdouble_t
- ctypedef npy_cdouble complex_t
- cdef inline object PyArray_MultiIterNew1(a):
- return PyArray_MultiIterNew(1, <void*>a)
- cdef inline object PyArray_MultiIterNew2(a, b):
- return PyArray_MultiIterNew(2, <void*>a, <void*>b)
- cdef inline object PyArray_MultiIterNew3(a, b, c):
- return PyArray_MultiIterNew(3, <void*>a, <void*>b, <void*> c)
- cdef inline object PyArray_MultiIterNew4(a, b, c, d):
- return PyArray_MultiIterNew(4, <void*>a, <void*>b, <void*>c, <void*> d)
- cdef inline object PyArray_MultiIterNew5(a, b, c, d, e):
- return PyArray_MultiIterNew(5, <void*>a, <void*>b, <void*>c, <void*> d, <void*> e)
- cdef inline tuple PyDataType_SHAPE(dtype d):
- if PyDataType_HASSUBARRAY(d):
- return <tuple>d.subarray.shape
- else:
- return ()
- cdef inline char* _util_dtypestring(dtype descr, char* f, char* end, int* offset) except NULL:
- # Recursive utility function used in __getbuffer__ to get format
- # string. The new location in the format string is returned.
- cdef dtype child
- cdef int endian_detector = 1
- cdef bint little_endian = ((<char*>&endian_detector)[0] != 0)
- cdef tuple fields
- for childname in descr.names:
- fields = descr.fields[childname]
- child, new_offset = fields
- if (end - f) - <int>(new_offset - offset[0]) < 15:
- raise RuntimeError(u"Format string allocated too short, see comment in numpy.pxd")
- if ((child.byteorder == c'>' and little_endian) or
- (child.byteorder == c'<' and not little_endian)):
- raise ValueError(u"Non-native byte order not supported")
- # One could encode it in the format string and have Cython
- # complain instead, BUT: < and > in format strings also imply
- # standardized sizes for datatypes, and we rely on native in
- # order to avoid reencoding data types based on their size.
- #
- # A proper PEP 3118 exporter for other clients than Cython
- # must deal properly with this!
- # Output padding bytes
- while offset[0] < new_offset:
- f[0] = 120 # "x"; pad byte
- f += 1
- offset[0] += 1
- offset[0] += child.itemsize
- if not PyDataType_HASFIELDS(child):
- t = child.type_num
- if end - f < 5:
- raise RuntimeError(u"Format string allocated too short.")
- # Until ticket #99 is fixed, use integers to avoid warnings
- if t == NPY_BYTE: f[0] = 98 #"b"
- elif t == NPY_UBYTE: f[0] = 66 #"B"
- elif t == NPY_SHORT: f[0] = 104 #"h"
- elif t == NPY_USHORT: f[0] = 72 #"H"
- elif t == NPY_INT: f[0] = 105 #"i"
- elif t == NPY_UINT: f[0] = 73 #"I"
- elif t == NPY_LONG: f[0] = 108 #"l"
- elif t == NPY_ULONG: f[0] = 76 #"L"
- elif t == NPY_LONGLONG: f[0] = 113 #"q"
- elif t == NPY_ULONGLONG: f[0] = 81 #"Q"
- elif t == NPY_FLOAT: f[0] = 102 #"f"
- elif t == NPY_DOUBLE: f[0] = 100 #"d"
- elif t == NPY_LONGDOUBLE: f[0] = 103 #"g"
- elif t == NPY_CFLOAT: f[0] = 90; f[1] = 102; f += 1 # Zf
- elif t == NPY_CDOUBLE: f[0] = 90; f[1] = 100; f += 1 # Zd
- elif t == NPY_CLONGDOUBLE: f[0] = 90; f[1] = 103; f += 1 # Zg
- elif t == NPY_OBJECT: f[0] = 79 #"O"
- else:
- raise ValueError(u"unknown dtype code in numpy.pxd (%d)" % t)
- f += 1
- else:
- # Cython ignores struct boundary information ("T{...}"),
- # so don't output it
- f = _util_dtypestring(child, f, end, offset)
- return f
- #
- # ufunc API
- #
- cdef extern from "numpy/ufuncobject.h":
- ctypedef void (*PyUFuncGenericFunction) (char **, npy_intp *, npy_intp *, void *)
- ctypedef extern class numpy.ufunc [object PyUFuncObject]:
- cdef:
- int nin, nout, nargs
- int identity
- PyUFuncGenericFunction *functions
- void **data
- int ntypes
- int check_return
- char *name
- char *types
- char *doc
- void *ptr
- PyObject *obj
- PyObject *userloops
- cdef enum:
- PyUFunc_Zero
- PyUFunc_One
- PyUFunc_None
- UFUNC_ERR_IGNORE
- UFUNC_ERR_WARN
- UFUNC_ERR_RAISE
- UFUNC_ERR_CALL
- UFUNC_ERR_PRINT
- UFUNC_ERR_LOG
- UFUNC_MASK_DIVIDEBYZERO
- UFUNC_MASK_OVERFLOW
- UFUNC_MASK_UNDERFLOW
- UFUNC_MASK_INVALID
- UFUNC_SHIFT_DIVIDEBYZERO
- UFUNC_SHIFT_OVERFLOW
- UFUNC_SHIFT_UNDERFLOW
- UFUNC_SHIFT_INVALID
- UFUNC_FPE_DIVIDEBYZERO
- UFUNC_FPE_OVERFLOW
- UFUNC_FPE_UNDERFLOW
- UFUNC_FPE_INVALID
- UFUNC_ERR_DEFAULT
- UFUNC_ERR_DEFAULT2
- object PyUFunc_FromFuncAndData(PyUFuncGenericFunction *,
- void **, char *, int, int, int, int, char *, char *, int)
- int PyUFunc_RegisterLoopForType(ufunc, int,
- PyUFuncGenericFunction, int *, void *)
- int PyUFunc_GenericFunction \
- (ufunc, PyObject *, PyObject *, PyArrayObject **)
- void PyUFunc_f_f_As_d_d \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_d_d \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_f_f \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_g_g \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_F_F_As_D_D \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_F_F \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_D_D \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_G_G \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_O_O \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_ff_f_As_dd_d \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_ff_f \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_dd_d \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_gg_g \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_FF_F_As_DD_D \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_DD_D \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_FF_F \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_GG_G \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_OO_O \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_O_O_method \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_OO_O_method \
- (char **, npy_intp *, npy_intp *, void *)
- void PyUFunc_On_Om \
- (char **, npy_intp *, npy_intp *, void *)
- int PyUFunc_GetPyValues \
- (char *, int *, int *, PyObject **)
- int PyUFunc_checkfperr \
- (int, PyObject *, int *)
- void PyUFunc_clearfperr()
- int PyUFunc_getfperr()
- int PyUFunc_handlefperr \
- (int, PyObject *, int, int *)
- int PyUFunc_ReplaceLoopBySignature \
- (ufunc, PyUFuncGenericFunction, int *, PyUFuncGenericFunction *)
- object PyUFunc_FromFuncAndDataAndSignature \
- (PyUFuncGenericFunction *, void **, char *, int, int, int,
- int, char *, char *, int, char *)
- int _import_umath() except -1
- cdef inline void set_array_base(ndarray arr, object base):
- Py_INCREF(base) # important to do this before stealing the reference below!
- PyArray_SetBaseObject(arr, base)
- cdef inline object get_array_base(ndarray arr):
- base = PyArray_BASE(arr)
- if base is NULL:
- return None
- return <object>base
- # Versions of the import_* functions which are more suitable for
- # Cython code.
- cdef inline int import_array() except -1:
- try:
- _import_array()
- except Exception:
- raise ImportError("numpy.core.multiarray failed to import")
- cdef inline int import_umath() except -1:
- try:
- _import_umath()
- except Exception:
- raise ImportError("numpy.core.umath failed to import")
- cdef inline int import_ufunc() except -1:
- try:
- _import_umath()
- except Exception:
- raise ImportError("numpy.core.umath failed to import")
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