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- """
- array.pxd
- Cython interface to Python's array.array module.
- * 1D contiguous data view
- * tools for fast array creation, maximum C-speed and handiness
- * suitable as allround light weight auto-array within Cython code too
- Usage:
- >>> cimport array
- Usage through Cython buffer interface (Py2.3+):
- >>> def f(arg1, unsigned i, double dx)
- ... array.array[double] a = arg1
- ... a[i] += dx
- Fast C-level new_array(_zeros), resize_array, copy_array, Py_SIZE(obj),
- zero_array
- cdef array.array[double] k = array.copy(d)
- cdef array.array[double] n = array.array(d, Py_SIZE(d) * 2 )
- cdef array.array[double] m = array.zeros_like(FLOAT_TEMPLATE)
- array.resize(f, 200000)
- Zero overhead with naked data pointer views by union:
- _f, _d, _i, _c, _u, ...
- => Original C array speed + Python dynamic memory management
- cdef array.array a = inarray
- if
- a._d[2] += 0.66 # use as double array without extra casting
- float *subview = vector._f + 10 # starting from 10th element
- unsigned char *subview_buffer = vector._B + 4
- Suitable as lightweight arrays intra Cython without speed penalty.
- Replacement for C stack/malloc arrays; no trouble with refcounting,
- mem.leaks; seamless Python compatibility, buffer() optional
- last changes: 2009-05-15 rk
- : 2009-12-06 bp
- : 2012-05-02 andreasvc
- : (see revision control)
- """
- from libc.string cimport strcat, strncat, \
- memset, memchr, memcmp, memcpy, memmove
- from cpython.object cimport Py_SIZE
- from cpython.ref cimport PyTypeObject, Py_TYPE
- from cpython.exc cimport PyErr_BadArgument
- from cpython.mem cimport PyObject_Malloc, PyObject_Free
- cdef extern from *: # Hard-coded utility code hack.
- ctypedef class array.array [object arrayobject]
- ctypedef object GETF(array a, Py_ssize_t ix)
- ctypedef object SETF(array a, Py_ssize_t ix, object o)
- ctypedef struct arraydescr: # [object arraydescr]:
- char typecode
- int itemsize
- GETF getitem # PyObject * (*getitem)(struct arrayobject *, Py_ssize_t);
- SETF setitem # int (*setitem)(struct arrayobject *, Py_ssize_t, PyObject *);
- ctypedef union __data_union:
- # views of ob_item:
- float* as_floats # direct float pointer access to buffer
- double* as_doubles # double ...
- int* as_ints
- unsigned int *as_uints
- unsigned char *as_uchars
- signed char *as_schars
- char *as_chars
- unsigned long *as_ulongs
- long *as_longs
- unsigned long long *as_ulonglongs
- long long *as_longlongs
- short *as_shorts
- unsigned short *as_ushorts
- Py_UNICODE *as_pyunicodes
- void *as_voidptr
- ctypedef class array.array [object arrayobject]:
- cdef __cythonbufferdefaults__ = {'ndim' : 1, 'mode':'c'}
- cdef:
- Py_ssize_t ob_size
- arraydescr* ob_descr # struct arraydescr *ob_descr;
- __data_union data
- def __getbuffer__(self, Py_buffer* info, int flags):
- # This implementation of getbuffer is geared towards Cython
- # requirements, and does not yet fulfill the PEP.
- # In particular strided access is always provided regardless
- # of flags
- item_count = Py_SIZE(self)
- info.suboffsets = NULL
- info.buf = self.data.as_chars
- info.readonly = 0
- info.ndim = 1
- info.itemsize = self.ob_descr.itemsize # e.g. sizeof(float)
- info.len = info.itemsize * item_count
- info.shape = <Py_ssize_t*> PyObject_Malloc(sizeof(Py_ssize_t) + 2)
- if not info.shape:
- raise MemoryError()
- info.shape[0] = item_count # constant regardless of resizing
- info.strides = &info.itemsize
- info.format = <char*> (info.shape + 1)
- info.format[0] = self.ob_descr.typecode
- info.format[1] = 0
- info.obj = self
- def __releasebuffer__(self, Py_buffer* info):
- PyObject_Free(info.shape)
- array newarrayobject(PyTypeObject* type, Py_ssize_t size, arraydescr *descr)
- # fast resize/realloc
- # not suitable for small increments; reallocation 'to the point'
- int resize(array self, Py_ssize_t n) except -1
- # efficient for small increments (not in Py2.3-)
- int resize_smart(array self, Py_ssize_t n) except -1
- cdef inline array clone(array template, Py_ssize_t length, bint zero):
- """ fast creation of a new array, given a template array.
- type will be same as template.
- if zero is true, new array will be initialized with zeroes."""
- cdef array op = newarrayobject(Py_TYPE(template), length, template.ob_descr)
- if zero and op is not None:
- memset(op.data.as_chars, 0, length * op.ob_descr.itemsize)
- return op
- cdef inline array copy(array self):
- """ make a copy of an array. """
- cdef array op = newarrayobject(Py_TYPE(self), Py_SIZE(self), self.ob_descr)
- memcpy(op.data.as_chars, self.data.as_chars, Py_SIZE(op) * op.ob_descr.itemsize)
- return op
- cdef inline int extend_buffer(array self, char* stuff, Py_ssize_t n) except -1:
- """ efficient appending of new stuff of same type
- (e.g. of same array type)
- n: number of elements (not number of bytes!) """
- cdef Py_ssize_t itemsize = self.ob_descr.itemsize
- cdef Py_ssize_t origsize = Py_SIZE(self)
- resize_smart(self, origsize + n)
- memcpy(self.data.as_chars + origsize * itemsize, stuff, n * itemsize)
- return 0
- cdef inline int extend(array self, array other) except -1:
- """ extend array with data from another array; types must match. """
- if self.ob_descr.typecode != other.ob_descr.typecode:
- PyErr_BadArgument()
- return extend_buffer(self, other.data.as_chars, Py_SIZE(other))
- cdef inline void zero(array self):
- """ set all elements of array to zero. """
- memset(self.data.as_chars, 0, Py_SIZE(self) * self.ob_descr.itemsize)
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