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- """
- Handlers for IPythonDirective's @doctest pseudo-decorator.
- The Sphinx extension that provides support for embedded IPython code provides
- a pseudo-decorator @doctest, which treats the input/output block as a
- doctest, raising a RuntimeError during doc generation if the actual output
- (after running the input) does not match the expected output.
- An example usage is:
- .. code-block:: rst
- .. ipython::
- In [1]: x = 1
- @doctest
- In [2]: x + 2
- Out[3]: 3
- One can also provide arguments to the decorator. The first argument should be
- the name of a custom handler. The specification of any other arguments is
- determined by the handler. For example,
- .. code-block:: rst
- .. ipython::
- @doctest float
- In [154]: 0.1 + 0.2
- Out[154]: 0.3
- allows the actual output ``0.30000000000000004`` to match the expected output
- due to a comparison with `np.allclose`.
- This module contains handlers for the @doctest pseudo-decorator. Handlers
- should have the following function signature::
- handler(sphinx_shell, args, input_lines, found, submitted)
- where `sphinx_shell` is the embedded Sphinx shell, `args` contains the list
- of arguments that follow: '@doctest handler_name', `input_lines` contains
- a list of the lines relevant to the current doctest, `found` is a string
- containing the output from the IPython shell, and `submitted` is a string
- containing the expected output from the IPython shell.
- Handlers must be registered in the `doctests` dict at the end of this module.
- """
- def str_to_array(s):
- """
- Simplistic converter of strings from repr to float NumPy arrays.
- If the repr representation has ellipsis in it, then this will fail.
- Parameters
- ----------
- s : str
- The repr version of a NumPy array.
- Examples
- --------
- >>> s = "array([ 0.3, inf, nan])"
- >>> a = str_to_array(s)
- """
- import numpy as np
- # Need to make sure eval() knows about inf and nan.
- # This also assumes default printoptions for NumPy.
- from numpy import inf, nan
- if s.startswith(u'array'):
- # Remove array( and )
- s = s[6:-1]
- if s.startswith(u'['):
- a = np.array(eval(s), dtype=float)
- else:
- # Assume its a regular float. Force 1D so we can index into it.
- a = np.atleast_1d(float(s))
- return a
- def float_doctest(sphinx_shell, args, input_lines, found, submitted):
- """
- Doctest which allow the submitted output to vary slightly from the input.
- Here is how it might appear in an rst file:
- .. code-block:: rst
- .. ipython::
- @doctest float
- In [1]: 0.1 + 0.2
- Out[1]: 0.3
- """
- import numpy as np
- if len(args) == 2:
- rtol = 1e-05
- atol = 1e-08
- else:
- # Both must be specified if any are specified.
- try:
- rtol = float(args[2])
- atol = float(args[3])
- except IndexError as e:
- e = ("Both `rtol` and `atol` must be specified "
- "if either are specified: {0}".format(args))
- raise IndexError(e) from e
- try:
- submitted = str_to_array(submitted)
- found = str_to_array(found)
- except:
- # For example, if the array is huge and there are ellipsis in it.
- error = True
- else:
- found_isnan = np.isnan(found)
- submitted_isnan = np.isnan(submitted)
- error = not np.allclose(found_isnan, submitted_isnan)
- error |= not np.allclose(found[~found_isnan],
- submitted[~submitted_isnan],
- rtol=rtol, atol=atol)
- TAB = ' ' * 4
- directive = sphinx_shell.directive
- if directive is None:
- source = 'Unavailable'
- content = 'Unavailable'
- else:
- source = directive.state.document.current_source
- # Add tabs and make into a single string.
- content = '\n'.join([TAB + line for line in directive.content])
- if error:
- e = ('doctest float comparison failure\n\n'
- 'Document source: {0}\n\n'
- 'Raw content: \n{1}\n\n'
- 'On input line(s):\n{TAB}{2}\n\n'
- 'we found output:\n{TAB}{3}\n\n'
- 'instead of the expected:\n{TAB}{4}\n\n')
- e = e.format(source, content, '\n'.join(input_lines), repr(found),
- repr(submitted), TAB=TAB)
- raise RuntimeError(e)
- # dict of allowable doctest handlers. The key represents the first argument
- # that must be given to @doctest in order to activate the handler.
- doctests = {
- 'float': float_doctest,
- }
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