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- #pragma once
- #ifdef __GNUC__
- #pragma GCC diagnostic push
- #pragma GCC diagnostic ignored "-Wunused-parameter"
- #endif
- //===- llvm/ADT/SuffixTree.h - Tree for substrings --------------*- C++ -*-===//
- //
- // Part of the LLVM Project, under the Apache License v2.0 with LLVM Exceptions.
- // See https://llvm.org/LICENSE.txt for license information.
- // SPDX-License-Identifier: Apache-2.0 WITH LLVM-exception
- //
- //===----------------------------------------------------------------------===//
- //
- // This file defines the Suffix Tree class and Suffix Tree Node struct.
- //
- //===----------------------------------------------------------------------===//
- #ifndef LLVM_SUPPORT_SUFFIXTREE_H
- #define LLVM_SUPPORT_SUFFIXTREE_H
- #include "llvm/ADT/ArrayRef.h"
- #include "llvm/ADT/DenseMap.h"
- #include "llvm/Support/Allocator.h"
- #include <vector>
- namespace llvm {
- /// Represents an undefined index in the suffix tree.
- const unsigned EmptyIdx = -1;
- /// A node in a suffix tree which represents a substring or suffix.
- ///
- /// Each node has either no children or at least two children, with the root
- /// being a exception in the empty tree.
- ///
- /// Children are represented as a map between unsigned integers and nodes. If
- /// a node N has a child M on unsigned integer k, then the mapping represented
- /// by N is a proper prefix of the mapping represented by M. Note that this,
- /// although similar to a trie is somewhat different: each node stores a full
- /// substring of the full mapping rather than a single character state.
- ///
- /// Each internal node contains a pointer to the internal node representing
- /// the same string, but with the first character chopped off. This is stored
- /// in \p Link. Each leaf node stores the start index of its respective
- /// suffix in \p SuffixIdx.
- struct SuffixTreeNode {
- /// The children of this node.
- ///
- /// A child existing on an unsigned integer implies that from the mapping
- /// represented by the current node, there is a way to reach another
- /// mapping by tacking that character on the end of the current string.
- llvm::DenseMap<unsigned, SuffixTreeNode *> Children;
- /// The start index of this node's substring in the main string.
- unsigned StartIdx = EmptyIdx;
- /// The end index of this node's substring in the main string.
- ///
- /// Every leaf node must have its \p EndIdx incremented at the end of every
- /// step in the construction algorithm. To avoid having to update O(N)
- /// nodes individually at the end of every step, the end index is stored
- /// as a pointer.
- unsigned *EndIdx = nullptr;
- /// For leaves, the start index of the suffix represented by this node.
- ///
- /// For all other nodes, this is ignored.
- unsigned SuffixIdx = EmptyIdx;
- /// For internal nodes, a pointer to the internal node representing
- /// the same sequence with the first character chopped off.
- ///
- /// This acts as a shortcut in Ukkonen's algorithm. One of the things that
- /// Ukkonen's algorithm does to achieve linear-time construction is
- /// keep track of which node the next insert should be at. This makes each
- /// insert O(1), and there are a total of O(N) inserts. The suffix link
- /// helps with inserting children of internal nodes.
- ///
- /// Say we add a child to an internal node with associated mapping S. The
- /// next insertion must be at the node representing S - its first character.
- /// This is given by the way that we iteratively build the tree in Ukkonen's
- /// algorithm. The main idea is to look at the suffixes of each prefix in the
- /// string, starting with the longest suffix of the prefix, and ending with
- /// the shortest. Therefore, if we keep pointers between such nodes, we can
- /// move to the next insertion point in O(1) time. If we don't, then we'd
- /// have to query from the root, which takes O(N) time. This would make the
- /// construction algorithm O(N^2) rather than O(N).
- SuffixTreeNode *Link = nullptr;
- /// The length of the string formed by concatenating the edge labels from the
- /// root to this node.
- unsigned ConcatLen = 0;
- /// Returns true if this node is a leaf.
- bool isLeaf() const { return SuffixIdx != EmptyIdx; }
- /// Returns true if this node is the root of its owning \p SuffixTree.
- bool isRoot() const { return StartIdx == EmptyIdx; }
- /// Return the number of elements in the substring associated with this node.
- size_t size() const {
- // Is it the root? If so, it's the empty string so return 0.
- if (isRoot())
- return 0;
- assert(*EndIdx != EmptyIdx && "EndIdx is undefined!");
- // Size = the number of elements in the string.
- // For example, [0 1 2 3] has length 4, not 3. 3-0 = 3, so we have 3-0+1.
- return *EndIdx - StartIdx + 1;
- }
- SuffixTreeNode(unsigned StartIdx, unsigned *EndIdx, SuffixTreeNode *Link)
- : StartIdx(StartIdx), EndIdx(EndIdx), Link(Link) {}
- SuffixTreeNode() = default;
- };
- /// A data structure for fast substring queries.
- ///
- /// Suffix trees represent the suffixes of their input strings in their leaves.
- /// A suffix tree is a type of compressed trie structure where each node
- /// represents an entire substring rather than a single character. Each leaf
- /// of the tree is a suffix.
- ///
- /// A suffix tree can be seen as a type of state machine where each state is a
- /// substring of the full string. The tree is structured so that, for a string
- /// of length N, there are exactly N leaves in the tree. This structure allows
- /// us to quickly find repeated substrings of the input string.
- ///
- /// In this implementation, a "string" is a vector of unsigned integers.
- /// These integers may result from hashing some data type. A suffix tree can
- /// contain 1 or many strings, which can then be queried as one large string.
- ///
- /// The suffix tree is implemented using Ukkonen's algorithm for linear-time
- /// suffix tree construction. Ukkonen's algorithm is explained in more detail
- /// in the paper by Esko Ukkonen "On-line construction of suffix trees. The
- /// paper is available at
- ///
- /// https://www.cs.helsinki.fi/u/ukkonen/SuffixT1withFigs.pdf
- class SuffixTree {
- public:
- /// Each element is an integer representing an instruction in the module.
- llvm::ArrayRef<unsigned> Str;
- /// A repeated substring in the tree.
- struct RepeatedSubstring {
- /// The length of the string.
- unsigned Length;
- /// The start indices of each occurrence.
- std::vector<unsigned> StartIndices;
- };
- private:
- /// Maintains each node in the tree.
- llvm::SpecificBumpPtrAllocator<SuffixTreeNode> NodeAllocator;
- /// The root of the suffix tree.
- ///
- /// The root represents the empty string. It is maintained by the
- /// \p NodeAllocator like every other node in the tree.
- SuffixTreeNode *Root = nullptr;
- /// Maintains the end indices of the internal nodes in the tree.
- ///
- /// Each internal node is guaranteed to never have its end index change
- /// during the construction algorithm; however, leaves must be updated at
- /// every step. Therefore, we need to store leaf end indices by reference
- /// to avoid updating O(N) leaves at every step of construction. Thus,
- /// every internal node must be allocated its own end index.
- llvm::BumpPtrAllocator InternalEndIdxAllocator;
- /// The end index of each leaf in the tree.
- unsigned LeafEndIdx = -1;
- /// Helper struct which keeps track of the next insertion point in
- /// Ukkonen's algorithm.
- struct ActiveState {
- /// The next node to insert at.
- SuffixTreeNode *Node = nullptr;
- /// The index of the first character in the substring currently being added.
- unsigned Idx = EmptyIdx;
- /// The length of the substring we have to add at the current step.
- unsigned Len = 0;
- };
- /// The point the next insertion will take place at in the
- /// construction algorithm.
- ActiveState Active;
- /// Allocate a leaf node and add it to the tree.
- ///
- /// \param Parent The parent of this node.
- /// \param StartIdx The start index of this node's associated string.
- /// \param Edge The label on the edge leaving \p Parent to this node.
- ///
- /// \returns A pointer to the allocated leaf node.
- SuffixTreeNode *insertLeaf(SuffixTreeNode &Parent, unsigned StartIdx,
- unsigned Edge);
- /// Allocate an internal node and add it to the tree.
- ///
- /// \param Parent The parent of this node. Only null when allocating the root.
- /// \param StartIdx The start index of this node's associated string.
- /// \param EndIdx The end index of this node's associated string.
- /// \param Edge The label on the edge leaving \p Parent to this node.
- ///
- /// \returns A pointer to the allocated internal node.
- SuffixTreeNode *insertInternalNode(SuffixTreeNode *Parent, unsigned StartIdx,
- unsigned EndIdx, unsigned Edge);
- /// Set the suffix indices of the leaves to the start indices of their
- /// respective suffixes.
- void setSuffixIndices();
- /// Construct the suffix tree for the prefix of the input ending at
- /// \p EndIdx.
- ///
- /// Used to construct the full suffix tree iteratively. At the end of each
- /// step, the constructed suffix tree is either a valid suffix tree, or a
- /// suffix tree with implicit suffixes. At the end of the final step, the
- /// suffix tree is a valid tree.
- ///
- /// \param EndIdx The end index of the current prefix in the main string.
- /// \param SuffixesToAdd The number of suffixes that must be added
- /// to complete the suffix tree at the current phase.
- ///
- /// \returns The number of suffixes that have not been added at the end of
- /// this step.
- unsigned extend(unsigned EndIdx, unsigned SuffixesToAdd);
- public:
- /// Construct a suffix tree from a sequence of unsigned integers.
- ///
- /// \param Str The string to construct the suffix tree for.
- SuffixTree(const std::vector<unsigned> &Str);
- /// Iterator for finding all repeated substrings in the suffix tree.
- struct RepeatedSubstringIterator {
- private:
- /// The current node we're visiting.
- SuffixTreeNode *N = nullptr;
- /// The repeated substring associated with this node.
- RepeatedSubstring RS;
- /// The nodes left to visit.
- std::vector<SuffixTreeNode *> ToVisit;
- /// The minimum length of a repeated substring to find.
- /// Since we're outlining, we want at least two instructions in the range.
- /// FIXME: This may not be true for targets like X86 which support many
- /// instruction lengths.
- const unsigned MinLength = 2;
- /// Move the iterator to the next repeated substring.
- void advance() {
- // Clear the current state. If we're at the end of the range, then this
- // is the state we want to be in.
- RS = RepeatedSubstring();
- N = nullptr;
- // Each leaf node represents a repeat of a string.
- std::vector<SuffixTreeNode *> LeafChildren;
- // Continue visiting nodes until we find one which repeats more than once.
- while (!ToVisit.empty()) {
- SuffixTreeNode *Curr = ToVisit.back();
- ToVisit.pop_back();
- LeafChildren.clear();
- // Keep track of the length of the string associated with the node. If
- // it's too short, we'll quit.
- unsigned Length = Curr->ConcatLen;
- // Iterate over each child, saving internal nodes for visiting, and
- // leaf nodes in LeafChildren. Internal nodes represent individual
- // strings, which may repeat.
- for (auto &ChildPair : Curr->Children) {
- // Save all of this node's children for processing.
- if (!ChildPair.second->isLeaf())
- ToVisit.push_back(ChildPair.second);
- // It's not an internal node, so it must be a leaf. If we have a
- // long enough string, then save the leaf children.
- else if (Length >= MinLength)
- LeafChildren.push_back(ChildPair.second);
- }
- // The root never represents a repeated substring. If we're looking at
- // that, then skip it.
- if (Curr->isRoot())
- continue;
- // Do we have any repeated substrings?
- if (LeafChildren.size() >= 2) {
- // Yes. Update the state to reflect this, and then bail out.
- N = Curr;
- RS.Length = Length;
- for (SuffixTreeNode *Leaf : LeafChildren)
- RS.StartIndices.push_back(Leaf->SuffixIdx);
- break;
- }
- }
- // At this point, either NewRS is an empty RepeatedSubstring, or it was
- // set in the above loop. Similarly, N is either nullptr, or the node
- // associated with NewRS.
- }
- public:
- /// Return the current repeated substring.
- RepeatedSubstring &operator*() { return RS; }
- RepeatedSubstringIterator &operator++() {
- advance();
- return *this;
- }
- RepeatedSubstringIterator operator++(int I) {
- RepeatedSubstringIterator It(*this);
- advance();
- return It;
- }
- bool operator==(const RepeatedSubstringIterator &Other) const {
- return N == Other.N;
- }
- bool operator!=(const RepeatedSubstringIterator &Other) const {
- return !(*this == Other);
- }
- RepeatedSubstringIterator(SuffixTreeNode *N) : N(N) {
- // Do we have a non-null node?
- if (N) {
- // Yes. At the first step, we need to visit all of N's children.
- // Note: This means that we visit N last.
- ToVisit.push_back(N);
- advance();
- }
- }
- };
- typedef RepeatedSubstringIterator iterator;
- iterator begin() { return iterator(Root); }
- iterator end() { return iterator(nullptr); }
- };
- } // namespace llvm
- #endif // LLVM_SUPPORT_SUFFIXTREE_H
- #ifdef __GNUC__
- #pragma GCC diagnostic pop
- #endif
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