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- """
- axes3d.py, original mplot3d version by John Porter
- Created: 23 Sep 2005
- Parts fixed by Reinier Heeres <reinier@heeres.eu>
- Minor additions by Ben Axelrod <baxelrod@coroware.com>
- Significant updates and revisions by Ben Root <ben.v.root@gmail.com>
- Module containing Axes3D, an object which can plot 3D objects on a
- 2D matplotlib figure.
- """
- from collections import defaultdict
- import functools
- import itertools
- import math
- import textwrap
- import numpy as np
- import matplotlib as mpl
- from matplotlib import _api, cbook, _docstring, _preprocess_data
- import matplotlib.artist as martist
- import matplotlib.axes as maxes
- import matplotlib.collections as mcoll
- import matplotlib.colors as mcolors
- import matplotlib.image as mimage
- import matplotlib.lines as mlines
- import matplotlib.patches as mpatches
- import matplotlib.container as mcontainer
- import matplotlib.transforms as mtransforms
- from matplotlib.axes import Axes
- from matplotlib.axes._base import _axis_method_wrapper, _process_plot_format
- from matplotlib.transforms import Bbox
- from matplotlib.tri._triangulation import Triangulation
- from . import art3d
- from . import proj3d
- from . import axis3d
- @_docstring.interpd
- @_api.define_aliases({
- "xlim": ["xlim3d"], "ylim": ["ylim3d"], "zlim": ["zlim3d"]})
- class Axes3D(Axes):
- """
- 3D Axes object.
- .. note::
- As a user, you do not instantiate Axes directly, but use Axes creation
- methods instead; e.g. from `.pyplot` or `.Figure`:
- `~.pyplot.subplots`, `~.pyplot.subplot_mosaic` or `.Figure.add_axes`.
- """
- name = '3d'
- _axis_names = ("x", "y", "z")
- Axes._shared_axes["z"] = cbook.Grouper()
- Axes._shared_axes["view"] = cbook.Grouper()
- vvec = _api.deprecate_privatize_attribute("3.7")
- eye = _api.deprecate_privatize_attribute("3.7")
- sx = _api.deprecate_privatize_attribute("3.7")
- sy = _api.deprecate_privatize_attribute("3.7")
- def __init__(
- self, fig, rect=None, *args,
- elev=30, azim=-60, roll=0, sharez=None, proj_type='persp',
- box_aspect=None, computed_zorder=True, focal_length=None,
- shareview=None,
- **kwargs):
- """
- Parameters
- ----------
- fig : Figure
- The parent figure.
- rect : tuple (left, bottom, width, height), default: None.
- The ``(left, bottom, width, height)`` axes position.
- elev : float, default: 30
- The elevation angle in degrees rotates the camera above and below
- the x-y plane, with a positive angle corresponding to a location
- above the plane.
- azim : float, default: -60
- The azimuthal angle in degrees rotates the camera about the z axis,
- with a positive angle corresponding to a right-handed rotation. In
- other words, a positive azimuth rotates the camera about the origin
- from its location along the +x axis towards the +y axis.
- roll : float, default: 0
- The roll angle in degrees rotates the camera about the viewing
- axis. A positive angle spins the camera clockwise, causing the
- scene to rotate counter-clockwise.
- sharez : Axes3D, optional
- Other Axes to share z-limits with.
- proj_type : {'persp', 'ortho'}
- The projection type, default 'persp'.
- box_aspect : 3-tuple of floats, default: None
- Changes the physical dimensions of the Axes3D, such that the ratio
- of the axis lengths in display units is x:y:z.
- If None, defaults to 4:4:3
- computed_zorder : bool, default: True
- If True, the draw order is computed based on the average position
- of the `.Artist`\\s along the view direction.
- Set to False if you want to manually control the order in which
- Artists are drawn on top of each other using their *zorder*
- attribute. This can be used for fine-tuning if the automatic order
- does not produce the desired result. Note however, that a manual
- zorder will only be correct for a limited view angle. If the figure
- is rotated by the user, it will look wrong from certain angles.
- focal_length : float, default: None
- For a projection type of 'persp', the focal length of the virtual
- camera. Must be > 0. If None, defaults to 1.
- For a projection type of 'ortho', must be set to either None
- or infinity (numpy.inf). If None, defaults to infinity.
- The focal length can be computed from a desired Field Of View via
- the equation: focal_length = 1/tan(FOV/2)
- shareview : Axes3D, optional
- Other Axes to share view angles with.
- **kwargs
- Other optional keyword arguments:
- %(Axes3D:kwdoc)s
- """
- if rect is None:
- rect = [0.0, 0.0, 1.0, 1.0]
- self.initial_azim = azim
- self.initial_elev = elev
- self.initial_roll = roll
- self.set_proj_type(proj_type, focal_length)
- self.computed_zorder = computed_zorder
- self.xy_viewLim = Bbox.unit()
- self.zz_viewLim = Bbox.unit()
- self.xy_dataLim = Bbox.unit()
- # z-limits are encoded in the x-component of the Bbox, y is un-used
- self.zz_dataLim = Bbox.unit()
- # inhibit autoscale_view until the axes are defined
- # they can't be defined until Axes.__init__ has been called
- self.view_init(self.initial_elev, self.initial_azim, self.initial_roll)
- self._sharez = sharez
- if sharez is not None:
- self._shared_axes["z"].join(self, sharez)
- self._adjustable = 'datalim'
- self._shareview = shareview
- if shareview is not None:
- self._shared_axes["view"].join(self, shareview)
- if kwargs.pop('auto_add_to_figure', False):
- raise AttributeError(
- 'auto_add_to_figure is no longer supported for Axes3D. '
- 'Use fig.add_axes(ax) instead.'
- )
- super().__init__(
- fig, rect, frameon=True, box_aspect=box_aspect, *args, **kwargs
- )
- # Disable drawing of axes by base class
- super().set_axis_off()
- # Enable drawing of axes by Axes3D class
- self.set_axis_on()
- self.M = None
- self.invM = None
- # func used to format z -- fall back on major formatters
- self.fmt_zdata = None
- self.mouse_init()
- self.figure.canvas.callbacks._connect_picklable(
- 'motion_notify_event', self._on_move)
- self.figure.canvas.callbacks._connect_picklable(
- 'button_press_event', self._button_press)
- self.figure.canvas.callbacks._connect_picklable(
- 'button_release_event', self._button_release)
- self.set_top_view()
- self.patch.set_linewidth(0)
- # Calculate the pseudo-data width and height
- pseudo_bbox = self.transLimits.inverted().transform([(0, 0), (1, 1)])
- self._pseudo_w, self._pseudo_h = pseudo_bbox[1] - pseudo_bbox[0]
- # mplot3d currently manages its own spines and needs these turned off
- # for bounding box calculations
- self.spines[:].set_visible(False)
- def set_axis_off(self):
- self._axis3don = False
- self.stale = True
- def set_axis_on(self):
- self._axis3don = True
- self.stale = True
- def convert_zunits(self, z):
- """
- For artists in an Axes, if the zaxis has units support,
- convert *z* using zaxis unit type
- """
- return self.zaxis.convert_units(z)
- def set_top_view(self):
- # this happens to be the right view for the viewing coordinates
- # moved up and to the left slightly to fit labels and axes
- xdwl = 0.95 / self._dist
- xdw = 0.9 / self._dist
- ydwl = 0.95 / self._dist
- ydw = 0.9 / self._dist
- # Set the viewing pane.
- self.viewLim.intervalx = (-xdwl, xdw)
- self.viewLim.intervaly = (-ydwl, ydw)
- self.stale = True
- def _init_axis(self):
- """Init 3D axes; overrides creation of regular X/Y axes."""
- self.xaxis = axis3d.XAxis(self)
- self.yaxis = axis3d.YAxis(self)
- self.zaxis = axis3d.ZAxis(self)
- def get_zaxis(self):
- """Return the ``ZAxis`` (`~.axis3d.Axis`) instance."""
- return self.zaxis
- get_zgridlines = _axis_method_wrapper("zaxis", "get_gridlines")
- get_zticklines = _axis_method_wrapper("zaxis", "get_ticklines")
- @_api.deprecated("3.7")
- def unit_cube(self, vals=None):
- return self._unit_cube(vals)
- def _unit_cube(self, vals=None):
- minx, maxx, miny, maxy, minz, maxz = vals or self.get_w_lims()
- return [(minx, miny, minz),
- (maxx, miny, minz),
- (maxx, maxy, minz),
- (minx, maxy, minz),
- (minx, miny, maxz),
- (maxx, miny, maxz),
- (maxx, maxy, maxz),
- (minx, maxy, maxz)]
- @_api.deprecated("3.7")
- def tunit_cube(self, vals=None, M=None):
- return self._tunit_cube(vals, M)
- def _tunit_cube(self, vals=None, M=None):
- if M is None:
- M = self.M
- xyzs = self._unit_cube(vals)
- tcube = proj3d._proj_points(xyzs, M)
- return tcube
- @_api.deprecated("3.7")
- def tunit_edges(self, vals=None, M=None):
- return self._tunit_edges(vals, M)
- def _tunit_edges(self, vals=None, M=None):
- tc = self._tunit_cube(vals, M)
- edges = [(tc[0], tc[1]),
- (tc[1], tc[2]),
- (tc[2], tc[3]),
- (tc[3], tc[0]),
- (tc[0], tc[4]),
- (tc[1], tc[5]),
- (tc[2], tc[6]),
- (tc[3], tc[7]),
- (tc[4], tc[5]),
- (tc[5], tc[6]),
- (tc[6], tc[7]),
- (tc[7], tc[4])]
- return edges
- def set_aspect(self, aspect, adjustable=None, anchor=None, share=False):
- """
- Set the aspect ratios.
- Parameters
- ----------
- aspect : {'auto', 'equal', 'equalxy', 'equalxz', 'equalyz'}
- Possible values:
- ========= ==================================================
- value description
- ========= ==================================================
- 'auto' automatic; fill the position rectangle with data.
- 'equal' adapt all the axes to have equal aspect ratios.
- 'equalxy' adapt the x and y axes to have equal aspect ratios.
- 'equalxz' adapt the x and z axes to have equal aspect ratios.
- 'equalyz' adapt the y and z axes to have equal aspect ratios.
- ========= ==================================================
- adjustable : None or {'box', 'datalim'}, optional
- If not *None*, this defines which parameter will be adjusted to
- meet the required aspect. See `.set_adjustable` for further
- details.
- anchor : None or str or 2-tuple of float, optional
- If not *None*, this defines where the Axes will be drawn if there
- is extra space due to aspect constraints. The most common way to
- specify the anchor are abbreviations of cardinal directions:
- ===== =====================
- value description
- ===== =====================
- 'C' centered
- 'SW' lower left corner
- 'S' middle of bottom edge
- 'SE' lower right corner
- etc.
- ===== =====================
- See `~.Axes.set_anchor` for further details.
- share : bool, default: False
- If ``True``, apply the settings to all shared Axes.
- See Also
- --------
- mpl_toolkits.mplot3d.axes3d.Axes3D.set_box_aspect
- """
- _api.check_in_list(('auto', 'equal', 'equalxy', 'equalyz', 'equalxz'),
- aspect=aspect)
- super().set_aspect(
- aspect='auto', adjustable=adjustable, anchor=anchor, share=share)
- self._aspect = aspect
- if aspect in ('equal', 'equalxy', 'equalxz', 'equalyz'):
- ax_indices = self._equal_aspect_axis_indices(aspect)
- view_intervals = np.array([self.xaxis.get_view_interval(),
- self.yaxis.get_view_interval(),
- self.zaxis.get_view_interval()])
- ptp = np.ptp(view_intervals, axis=1)
- if self._adjustable == 'datalim':
- mean = np.mean(view_intervals, axis=1)
- scale = max(ptp[ax_indices] / self._box_aspect[ax_indices])
- deltas = scale * self._box_aspect
- for i, set_lim in enumerate((self.set_xlim3d,
- self.set_ylim3d,
- self.set_zlim3d)):
- if i in ax_indices:
- set_lim(mean[i] - deltas[i]/2., mean[i] + deltas[i]/2.)
- else: # 'box'
- # Change the box aspect such that the ratio of the length of
- # the unmodified axis to the length of the diagonal
- # perpendicular to it remains unchanged.
- box_aspect = np.array(self._box_aspect)
- box_aspect[ax_indices] = ptp[ax_indices]
- remaining_ax_indices = {0, 1, 2}.difference(ax_indices)
- if remaining_ax_indices:
- remaining = remaining_ax_indices.pop()
- old_diag = np.linalg.norm(self._box_aspect[ax_indices])
- new_diag = np.linalg.norm(box_aspect[ax_indices])
- box_aspect[remaining] *= new_diag / old_diag
- self.set_box_aspect(box_aspect)
- def _equal_aspect_axis_indices(self, aspect):
- """
- Get the indices for which of the x, y, z axes are constrained to have
- equal aspect ratios.
- Parameters
- ----------
- aspect : {'auto', 'equal', 'equalxy', 'equalxz', 'equalyz'}
- See descriptions in docstring for `.set_aspect()`.
- """
- ax_indices = [] # aspect == 'auto'
- if aspect == 'equal':
- ax_indices = [0, 1, 2]
- elif aspect == 'equalxy':
- ax_indices = [0, 1]
- elif aspect == 'equalxz':
- ax_indices = [0, 2]
- elif aspect == 'equalyz':
- ax_indices = [1, 2]
- return ax_indices
- def set_box_aspect(self, aspect, *, zoom=1):
- """
- Set the Axes box aspect.
- The box aspect is the ratio of height to width in display
- units for each face of the box when viewed perpendicular to
- that face. This is not to be confused with the data aspect (see
- `~.Axes3D.set_aspect`). The default ratios are 4:4:3 (x:y:z).
- To simulate having equal aspect in data space, set the box
- aspect to match your data range in each dimension.
- *zoom* controls the overall size of the Axes3D in the figure.
- Parameters
- ----------
- aspect : 3-tuple of floats or None
- Changes the physical dimensions of the Axes3D, such that the ratio
- of the axis lengths in display units is x:y:z.
- If None, defaults to (4, 4, 3).
- zoom : float, default: 1
- Control overall size of the Axes3D in the figure. Must be > 0.
- """
- if zoom <= 0:
- raise ValueError(f'Argument zoom = {zoom} must be > 0')
- if aspect is None:
- aspect = np.asarray((4, 4, 3), dtype=float)
- else:
- aspect = np.asarray(aspect, dtype=float)
- _api.check_shape((3,), aspect=aspect)
- # default scale tuned to match the mpl32 appearance.
- aspect *= 1.8294640721620434 * zoom / np.linalg.norm(aspect)
- self._box_aspect = aspect
- self.stale = True
- def apply_aspect(self, position=None):
- if position is None:
- position = self.get_position(original=True)
- # in the superclass, we would go through and actually deal with axis
- # scales and box/datalim. Those are all irrelevant - all we need to do
- # is make sure our coordinate system is square.
- trans = self.get_figure().transSubfigure
- bb = mtransforms.Bbox.unit().transformed(trans)
- # this is the physical aspect of the panel (or figure):
- fig_aspect = bb.height / bb.width
- box_aspect = 1
- pb = position.frozen()
- pb1 = pb.shrunk_to_aspect(box_aspect, pb, fig_aspect)
- self._set_position(pb1.anchored(self.get_anchor(), pb), 'active')
- @martist.allow_rasterization
- def draw(self, renderer):
- if not self.get_visible():
- return
- self._unstale_viewLim()
- # draw the background patch
- self.patch.draw(renderer)
- self._frameon = False
- # first, set the aspect
- # this is duplicated from `axes._base._AxesBase.draw`
- # but must be called before any of the artist are drawn as
- # it adjusts the view limits and the size of the bounding box
- # of the Axes
- locator = self.get_axes_locator()
- self.apply_aspect(locator(self, renderer) if locator else None)
- # add the projection matrix to the renderer
- self.M = self.get_proj()
- self.invM = np.linalg.inv(self.M)
- collections_and_patches = (
- artist for artist in self._children
- if isinstance(artist, (mcoll.Collection, mpatches.Patch))
- and artist.get_visible())
- if self.computed_zorder:
- # Calculate projection of collections and patches and zorder
- # them. Make sure they are drawn above the grids.
- zorder_offset = max(axis.get_zorder()
- for axis in self._axis_map.values()) + 1
- collection_zorder = patch_zorder = zorder_offset
- for artist in sorted(collections_and_patches,
- key=lambda artist: artist.do_3d_projection(),
- reverse=True):
- if isinstance(artist, mcoll.Collection):
- artist.zorder = collection_zorder
- collection_zorder += 1
- elif isinstance(artist, mpatches.Patch):
- artist.zorder = patch_zorder
- patch_zorder += 1
- else:
- for artist in collections_and_patches:
- artist.do_3d_projection()
- if self._axis3don:
- # Draw panes first
- for axis in self._axis_map.values():
- axis.draw_pane(renderer)
- # Then gridlines
- for axis in self._axis_map.values():
- axis.draw_grid(renderer)
- # Then axes, labels, text, and ticks
- for axis in self._axis_map.values():
- axis.draw(renderer)
- # Then rest
- super().draw(renderer)
- def get_axis_position(self):
- vals = self.get_w_lims()
- tc = self._tunit_cube(vals, self.M)
- xhigh = tc[1][2] > tc[2][2]
- yhigh = tc[3][2] > tc[2][2]
- zhigh = tc[0][2] > tc[2][2]
- return xhigh, yhigh, zhigh
- def update_datalim(self, xys, **kwargs):
- """
- Not implemented in `~mpl_toolkits.mplot3d.axes3d.Axes3D`.
- """
- pass
- get_autoscalez_on = _axis_method_wrapper("zaxis", "_get_autoscale_on")
- set_autoscalez_on = _axis_method_wrapper("zaxis", "_set_autoscale_on")
- def set_zmargin(self, m):
- """
- Set padding of Z data limits prior to autoscaling.
- *m* times the data interval will be added to each end of that interval
- before it is used in autoscaling. If *m* is negative, this will clip
- the data range instead of expanding it.
- For example, if your data is in the range [0, 2], a margin of 0.1 will
- result in a range [-0.2, 2.2]; a margin of -0.1 will result in a range
- of [0.2, 1.8].
- Parameters
- ----------
- m : float greater than -0.5
- """
- if m <= -0.5:
- raise ValueError("margin must be greater than -0.5")
- self._zmargin = m
- self._request_autoscale_view("z")
- self.stale = True
- def margins(self, *margins, x=None, y=None, z=None, tight=True):
- """
- Set or retrieve autoscaling margins.
- See `.Axes.margins` for full documentation. Because this function
- applies to 3D Axes, it also takes a *z* argument, and returns
- ``(xmargin, ymargin, zmargin)``.
- """
- if margins and (x is not None or y is not None or z is not None):
- raise TypeError('Cannot pass both positional and keyword '
- 'arguments for x, y, and/or z.')
- elif len(margins) == 1:
- x = y = z = margins[0]
- elif len(margins) == 3:
- x, y, z = margins
- elif margins:
- raise TypeError('Must pass a single positional argument for all '
- 'margins, or one for each margin (x, y, z).')
- if x is None and y is None and z is None:
- if tight is not True:
- _api.warn_external(f'ignoring tight={tight!r} in get mode')
- return self._xmargin, self._ymargin, self._zmargin
- if x is not None:
- self.set_xmargin(x)
- if y is not None:
- self.set_ymargin(y)
- if z is not None:
- self.set_zmargin(z)
- self.autoscale_view(
- tight=tight, scalex=(x is not None), scaley=(y is not None),
- scalez=(z is not None)
- )
- def autoscale(self, enable=True, axis='both', tight=None):
- """
- Convenience method for simple axis view autoscaling.
- See `.Axes.autoscale` for full documentation. Because this function
- applies to 3D Axes, *axis* can also be set to 'z', and setting *axis*
- to 'both' autoscales all three axes.
- """
- if enable is None:
- scalex = True
- scaley = True
- scalez = True
- else:
- if axis in ['x', 'both']:
- self.set_autoscalex_on(bool(enable))
- scalex = self.get_autoscalex_on()
- else:
- scalex = False
- if axis in ['y', 'both']:
- self.set_autoscaley_on(bool(enable))
- scaley = self.get_autoscaley_on()
- else:
- scaley = False
- if axis in ['z', 'both']:
- self.set_autoscalez_on(bool(enable))
- scalez = self.get_autoscalez_on()
- else:
- scalez = False
- if scalex:
- self._request_autoscale_view("x", tight=tight)
- if scaley:
- self._request_autoscale_view("y", tight=tight)
- if scalez:
- self._request_autoscale_view("z", tight=tight)
- def auto_scale_xyz(self, X, Y, Z=None, had_data=None):
- # This updates the bounding boxes as to keep a record as to what the
- # minimum sized rectangular volume holds the data.
- if np.shape(X) == np.shape(Y):
- self.xy_dataLim.update_from_data_xy(
- np.column_stack([np.ravel(X), np.ravel(Y)]), not had_data)
- else:
- self.xy_dataLim.update_from_data_x(X, not had_data)
- self.xy_dataLim.update_from_data_y(Y, not had_data)
- if Z is not None:
- self.zz_dataLim.update_from_data_x(Z, not had_data)
- # Let autoscale_view figure out how to use this data.
- self.autoscale_view()
- def autoscale_view(self, tight=None, scalex=True, scaley=True,
- scalez=True):
- """
- Autoscale the view limits using the data limits.
- See `.Axes.autoscale_view` for full documentation. Because this
- function applies to 3D Axes, it also takes a *scalez* argument.
- """
- # This method looks at the rectangular volume (see above)
- # of data and decides how to scale the view portal to fit it.
- if tight is None:
- _tight = self._tight
- if not _tight:
- # if image data only just use the datalim
- for artist in self._children:
- if isinstance(artist, mimage.AxesImage):
- _tight = True
- elif isinstance(artist, (mlines.Line2D, mpatches.Patch)):
- _tight = False
- break
- else:
- _tight = self._tight = bool(tight)
- if scalex and self.get_autoscalex_on():
- x0, x1 = self.xy_dataLim.intervalx
- xlocator = self.xaxis.get_major_locator()
- x0, x1 = xlocator.nonsingular(x0, x1)
- if self._xmargin > 0:
- delta = (x1 - x0) * self._xmargin
- x0 -= delta
- x1 += delta
- if not _tight:
- x0, x1 = xlocator.view_limits(x0, x1)
- self.set_xbound(x0, x1)
- if scaley and self.get_autoscaley_on():
- y0, y1 = self.xy_dataLim.intervaly
- ylocator = self.yaxis.get_major_locator()
- y0, y1 = ylocator.nonsingular(y0, y1)
- if self._ymargin > 0:
- delta = (y1 - y0) * self._ymargin
- y0 -= delta
- y1 += delta
- if not _tight:
- y0, y1 = ylocator.view_limits(y0, y1)
- self.set_ybound(y0, y1)
- if scalez and self.get_autoscalez_on():
- z0, z1 = self.zz_dataLim.intervalx
- zlocator = self.zaxis.get_major_locator()
- z0, z1 = zlocator.nonsingular(z0, z1)
- if self._zmargin > 0:
- delta = (z1 - z0) * self._zmargin
- z0 -= delta
- z1 += delta
- if not _tight:
- z0, z1 = zlocator.view_limits(z0, z1)
- self.set_zbound(z0, z1)
- def get_w_lims(self):
- """Get 3D world limits."""
- minx, maxx = self.get_xlim3d()
- miny, maxy = self.get_ylim3d()
- minz, maxz = self.get_zlim3d()
- return minx, maxx, miny, maxy, minz, maxz
- # set_xlim, set_ylim are directly inherited from base Axes.
- def set_zlim(self, bottom=None, top=None, *, emit=True, auto=False,
- zmin=None, zmax=None):
- """
- Set 3D z limits.
- See `.Axes.set_ylim` for full documentation
- """
- if top is None and np.iterable(bottom):
- bottom, top = bottom
- if zmin is not None:
- if bottom is not None:
- raise TypeError("Cannot pass both 'bottom' and 'zmin'")
- bottom = zmin
- if zmax is not None:
- if top is not None:
- raise TypeError("Cannot pass both 'top' and 'zmax'")
- top = zmax
- return self.zaxis._set_lim(bottom, top, emit=emit, auto=auto)
- set_xlim3d = maxes.Axes.set_xlim
- set_ylim3d = maxes.Axes.set_ylim
- set_zlim3d = set_zlim
- def get_xlim(self):
- # docstring inherited
- return tuple(self.xy_viewLim.intervalx)
- def get_ylim(self):
- # docstring inherited
- return tuple(self.xy_viewLim.intervaly)
- def get_zlim(self):
- """
- Return the 3D z-axis view limits.
- Returns
- -------
- left, right : (float, float)
- The current z-axis limits in data coordinates.
- See Also
- --------
- set_zlim
- set_zbound, get_zbound
- invert_zaxis, zaxis_inverted
- Notes
- -----
- The z-axis may be inverted, in which case the *left* value will
- be greater than the *right* value.
- """
- return tuple(self.zz_viewLim.intervalx)
- get_zscale = _axis_method_wrapper("zaxis", "get_scale")
- # Redefine all three methods to overwrite their docstrings.
- set_xscale = _axis_method_wrapper("xaxis", "_set_axes_scale")
- set_yscale = _axis_method_wrapper("yaxis", "_set_axes_scale")
- set_zscale = _axis_method_wrapper("zaxis", "_set_axes_scale")
- set_xscale.__doc__, set_yscale.__doc__, set_zscale.__doc__ = map(
- """
- Set the {}-axis scale.
- Parameters
- ----------
- value : {{"linear"}}
- The axis scale type to apply. 3D axes currently only support
- linear scales; other scales yield nonsensical results.
- **kwargs
- Keyword arguments are nominally forwarded to the scale class, but
- none of them is applicable for linear scales.
- """.format,
- ["x", "y", "z"])
- get_zticks = _axis_method_wrapper("zaxis", "get_ticklocs")
- set_zticks = _axis_method_wrapper("zaxis", "set_ticks")
- get_zmajorticklabels = _axis_method_wrapper("zaxis", "get_majorticklabels")
- get_zminorticklabels = _axis_method_wrapper("zaxis", "get_minorticklabels")
- get_zticklabels = _axis_method_wrapper("zaxis", "get_ticklabels")
- set_zticklabels = _axis_method_wrapper(
- "zaxis", "set_ticklabels",
- doc_sub={"Axis.set_ticks": "Axes3D.set_zticks"})
- zaxis_date = _axis_method_wrapper("zaxis", "axis_date")
- if zaxis_date.__doc__:
- zaxis_date.__doc__ += textwrap.dedent("""
- Notes
- -----
- This function is merely provided for completeness, but 3D axes do not
- support dates for ticks, and so this may not work as expected.
- """)
- def clabel(self, *args, **kwargs):
- """Currently not implemented for 3D axes, and returns *None*."""
- return None
- def view_init(self, elev=None, azim=None, roll=None, vertical_axis="z",
- share=False):
- """
- Set the elevation and azimuth of the axes in degrees (not radians).
- This can be used to rotate the axes programmatically.
- To look normal to the primary planes, the following elevation and
- azimuth angles can be used. A roll angle of 0, 90, 180, or 270 deg
- will rotate these views while keeping the axes at right angles.
- ========== ==== ====
- view plane elev azim
- ========== ==== ====
- XY 90 -90
- XZ 0 -90
- YZ 0 0
- -XY -90 90
- -XZ 0 90
- -YZ 0 180
- ========== ==== ====
- Parameters
- ----------
- elev : float, default: None
- The elevation angle in degrees rotates the camera above the plane
- pierced by the vertical axis, with a positive angle corresponding
- to a location above that plane. For example, with the default
- vertical axis of 'z', the elevation defines the angle of the camera
- location above the x-y plane.
- If None, then the initial value as specified in the `Axes3D`
- constructor is used.
- azim : float, default: None
- The azimuthal angle in degrees rotates the camera about the
- vertical axis, with a positive angle corresponding to a
- right-handed rotation. For example, with the default vertical axis
- of 'z', a positive azimuth rotates the camera about the origin from
- its location along the +x axis towards the +y axis.
- If None, then the initial value as specified in the `Axes3D`
- constructor is used.
- roll : float, default: None
- The roll angle in degrees rotates the camera about the viewing
- axis. A positive angle spins the camera clockwise, causing the
- scene to rotate counter-clockwise.
- If None, then the initial value as specified in the `Axes3D`
- constructor is used.
- vertical_axis : {"z", "x", "y"}, default: "z"
- The axis to align vertically. *azim* rotates about this axis.
- share : bool, default: False
- If ``True``, apply the settings to all Axes with shared views.
- """
- self._dist = 10 # The camera distance from origin. Behaves like zoom
- if elev is None:
- elev = self.initial_elev
- if azim is None:
- azim = self.initial_azim
- if roll is None:
- roll = self.initial_roll
- vertical_axis = _api.check_getitem(
- dict(x=0, y=1, z=2), vertical_axis=vertical_axis
- )
- if share:
- axes = {sibling for sibling
- in self._shared_axes['view'].get_siblings(self)}
- else:
- axes = [self]
- for ax in axes:
- ax.elev = elev
- ax.azim = azim
- ax.roll = roll
- ax._vertical_axis = vertical_axis
- def set_proj_type(self, proj_type, focal_length=None):
- """
- Set the projection type.
- Parameters
- ----------
- proj_type : {'persp', 'ortho'}
- The projection type.
- focal_length : float, default: None
- For a projection type of 'persp', the focal length of the virtual
- camera. Must be > 0. If None, defaults to 1.
- The focal length can be computed from a desired Field Of View via
- the equation: focal_length = 1/tan(FOV/2)
- """
- _api.check_in_list(['persp', 'ortho'], proj_type=proj_type)
- if proj_type == 'persp':
- if focal_length is None:
- focal_length = 1
- elif focal_length <= 0:
- raise ValueError(f"focal_length = {focal_length} must be "
- "greater than 0")
- self._focal_length = focal_length
- else: # 'ortho':
- if focal_length not in (None, np.inf):
- raise ValueError(f"focal_length = {focal_length} must be "
- f"None for proj_type = {proj_type}")
- self._focal_length = np.inf
- def _roll_to_vertical(self, arr):
- """Roll arrays to match the different vertical axis."""
- return np.roll(arr, self._vertical_axis - 2)
- def get_proj(self):
- """Create the projection matrix from the current viewing position."""
- # Transform to uniform world coordinates 0-1, 0-1, 0-1
- box_aspect = self._roll_to_vertical(self._box_aspect)
- worldM = proj3d.world_transformation(
- *self.get_xlim3d(),
- *self.get_ylim3d(),
- *self.get_zlim3d(),
- pb_aspect=box_aspect,
- )
- # Look into the middle of the world coordinates:
- R = 0.5 * box_aspect
- # elev: elevation angle in the z plane.
- # azim: azimuth angle in the xy plane.
- # Coordinates for a point that rotates around the box of data.
- # p0, p1 corresponds to rotating the box only around the vertical axis.
- # p2 corresponds to rotating the box only around the horizontal axis.
- elev_rad = np.deg2rad(self.elev)
- azim_rad = np.deg2rad(self.azim)
- p0 = np.cos(elev_rad) * np.cos(azim_rad)
- p1 = np.cos(elev_rad) * np.sin(azim_rad)
- p2 = np.sin(elev_rad)
- # When changing vertical axis the coordinates changes as well.
- # Roll the values to get the same behaviour as the default:
- ps = self._roll_to_vertical([p0, p1, p2])
- # The coordinates for the eye viewing point. The eye is looking
- # towards the middle of the box of data from a distance:
- eye = R + self._dist * ps
- # vvec, self._vvec and self._eye are unused, remove when deprecated
- vvec = R - eye
- self._eye = eye
- self._vvec = vvec / np.linalg.norm(vvec)
- # Calculate the viewing axes for the eye position
- u, v, w = self._calc_view_axes(eye)
- self._view_u = u # _view_u is towards the right of the screen
- self._view_v = v # _view_v is towards the top of the screen
- self._view_w = w # _view_w is out of the screen
- # Generate the view and projection transformation matrices
- if self._focal_length == np.inf:
- # Orthographic projection
- viewM = proj3d._view_transformation_uvw(u, v, w, eye)
- projM = proj3d._ortho_transformation(-self._dist, self._dist)
- else:
- # Perspective projection
- # Scale the eye dist to compensate for the focal length zoom effect
- eye_focal = R + self._dist * ps * self._focal_length
- viewM = proj3d._view_transformation_uvw(u, v, w, eye_focal)
- projM = proj3d._persp_transformation(-self._dist,
- self._dist,
- self._focal_length)
- # Combine all the transformation matrices to get the final projection
- M0 = np.dot(viewM, worldM)
- M = np.dot(projM, M0)
- return M
- def mouse_init(self, rotate_btn=1, pan_btn=2, zoom_btn=3):
- """
- Set the mouse buttons for 3D rotation and zooming.
- Parameters
- ----------
- rotate_btn : int or list of int, default: 1
- The mouse button or buttons to use for 3D rotation of the axes.
- pan_btn : int or list of int, default: 2
- The mouse button or buttons to use to pan the 3D axes.
- zoom_btn : int or list of int, default: 3
- The mouse button or buttons to use to zoom the 3D axes.
- """
- self.button_pressed = None
- # coerce scalars into array-like, then convert into
- # a regular list to avoid comparisons against None
- # which breaks in recent versions of numpy.
- self._rotate_btn = np.atleast_1d(rotate_btn).tolist()
- self._pan_btn = np.atleast_1d(pan_btn).tolist()
- self._zoom_btn = np.atleast_1d(zoom_btn).tolist()
- def disable_mouse_rotation(self):
- """Disable mouse buttons for 3D rotation, panning, and zooming."""
- self.mouse_init(rotate_btn=[], pan_btn=[], zoom_btn=[])
- def can_zoom(self):
- # doc-string inherited
- return True
- def can_pan(self):
- # doc-string inherited
- return True
- def sharez(self, other):
- """
- Share the z-axis with *other*.
- This is equivalent to passing ``sharez=other`` when constructing the
- Axes, and cannot be used if the z-axis is already being shared with
- another Axes.
- """
- _api.check_isinstance(Axes3D, other=other)
- if self._sharez is not None and other is not self._sharez:
- raise ValueError("z-axis is already shared")
- self._shared_axes["z"].join(self, other)
- self._sharez = other
- self.zaxis.major = other.zaxis.major # Ticker instances holding
- self.zaxis.minor = other.zaxis.minor # locator and formatter.
- z0, z1 = other.get_zlim()
- self.set_zlim(z0, z1, emit=False, auto=other.get_autoscalez_on())
- self.zaxis._scale = other.zaxis._scale
- def shareview(self, other):
- """
- Share the view angles with *other*.
- This is equivalent to passing ``shareview=other`` when
- constructing the Axes, and cannot be used if the view angles are
- already being shared with another Axes.
- """
- _api.check_isinstance(Axes3D, other=other)
- if self._shareview is not None and other is not self._shareview:
- raise ValueError("view angles are already shared")
- self._shared_axes["view"].join(self, other)
- self._shareview = other
- vertical_axis = {0: "x", 1: "y", 2: "z"}[other._vertical_axis]
- self.view_init(elev=other.elev, azim=other.azim, roll=other.roll,
- vertical_axis=vertical_axis, share=True)
- def clear(self):
- # docstring inherited.
- super().clear()
- if self._focal_length == np.inf:
- self._zmargin = mpl.rcParams['axes.zmargin']
- else:
- self._zmargin = 0.
- self.grid(mpl.rcParams['axes3d.grid'])
- def _button_press(self, event):
- if event.inaxes == self:
- self.button_pressed = event.button
- self._sx, self._sy = event.xdata, event.ydata
- toolbar = self.figure.canvas.toolbar
- if toolbar and toolbar._nav_stack() is None:
- toolbar.push_current()
- def _button_release(self, event):
- self.button_pressed = None
- toolbar = self.figure.canvas.toolbar
- # backend_bases.release_zoom and backend_bases.release_pan call
- # push_current, so check the navigation mode so we don't call it twice
- if toolbar and self.get_navigate_mode() is None:
- toolbar.push_current()
- def _get_view(self):
- # docstring inherited
- return {
- "xlim": self.get_xlim(), "autoscalex_on": self.get_autoscalex_on(),
- "ylim": self.get_ylim(), "autoscaley_on": self.get_autoscaley_on(),
- "zlim": self.get_zlim(), "autoscalez_on": self.get_autoscalez_on(),
- }, (self.elev, self.azim, self.roll)
- def _set_view(self, view):
- # docstring inherited
- props, (elev, azim, roll) = view
- self.set(**props)
- self.elev = elev
- self.azim = azim
- self.roll = roll
- def format_zdata(self, z):
- """
- Return *z* string formatted. This function will use the
- :attr:`fmt_zdata` attribute if it is callable, else will fall
- back on the zaxis major formatter
- """
- try:
- return self.fmt_zdata(z)
- except (AttributeError, TypeError):
- func = self.zaxis.get_major_formatter().format_data_short
- val = func(z)
- return val
- def format_coord(self, xv, yv, renderer=None):
- """
- Return a string giving the current view rotation angles, or the x, y, z
- coordinates of the point on the nearest axis pane underneath the mouse
- cursor, depending on the mouse button pressed.
- """
- coords = ''
- if self.button_pressed in self._rotate_btn:
- # ignore xv and yv and display angles instead
- coords = self._rotation_coords()
- elif self.M is not None:
- coords = self._location_coords(xv, yv, renderer)
- return coords
- def _rotation_coords(self):
- """
- Return the rotation angles as a string.
- """
- norm_elev = art3d._norm_angle(self.elev)
- norm_azim = art3d._norm_angle(self.azim)
- norm_roll = art3d._norm_angle(self.roll)
- coords = (f"elevation={norm_elev:.0f}\N{DEGREE SIGN}, "
- f"azimuth={norm_azim:.0f}\N{DEGREE SIGN}, "
- f"roll={norm_roll:.0f}\N{DEGREE SIGN}"
- ).replace("-", "\N{MINUS SIGN}")
- return coords
- def _location_coords(self, xv, yv, renderer):
- """
- Return the location on the axis pane underneath the cursor as a string.
- """
- p1, pane_idx = self._calc_coord(xv, yv, renderer)
- xs = self.format_xdata(p1[0])
- ys = self.format_ydata(p1[1])
- zs = self.format_zdata(p1[2])
- if pane_idx == 0:
- coords = f'x pane={xs}, y={ys}, z={zs}'
- elif pane_idx == 1:
- coords = f'x={xs}, y pane={ys}, z={zs}'
- elif pane_idx == 2:
- coords = f'x={xs}, y={ys}, z pane={zs}'
- return coords
- def _get_camera_loc(self):
- """
- Returns the current camera location in data coordinates.
- """
- cx, cy, cz, dx, dy, dz = self._get_w_centers_ranges()
- c = np.array([cx, cy, cz])
- r = np.array([dx, dy, dz])
- if self._focal_length == np.inf: # orthographic projection
- focal_length = 1e9 # large enough to be effectively infinite
- else: # perspective projection
- focal_length = self._focal_length
- eye = c + self._view_w * self._dist * r / self._box_aspect * focal_length
- return eye
- def _calc_coord(self, xv, yv, renderer=None):
- """
- Given the 2D view coordinates, find the point on the nearest axis pane
- that lies directly below those coordinates. Returns a 3D point in data
- coordinates.
- """
- if self._focal_length == np.inf: # orthographic projection
- zv = 1
- else: # perspective projection
- zv = -1 / self._focal_length
- # Convert point on view plane to data coordinates
- p1 = np.array(proj3d.inv_transform(xv, yv, zv, self.invM)).ravel()
- # Get the vector from the camera to the point on the view plane
- vec = self._get_camera_loc() - p1
- # Get the pane locations for each of the axes
- pane_locs = []
- for axis in self._axis_map.values():
- xys, loc = axis.active_pane(renderer)
- pane_locs.append(loc)
- # Find the distance to the nearest pane by projecting the view vector
- scales = np.zeros(3)
- for i in range(3):
- if vec[i] == 0:
- scales[i] = np.inf
- else:
- scales[i] = (p1[i] - pane_locs[i]) / vec[i]
- pane_idx = np.argmin(abs(scales))
- scale = scales[pane_idx]
- # Calculate the point on the closest pane
- p2 = p1 - scale*vec
- return p2, pane_idx
- def _on_move(self, event):
- """
- Mouse moving.
- By default, button-1 rotates, button-2 pans, and button-3 zooms;
- these buttons can be modified via `mouse_init`.
- """
- if not self.button_pressed:
- return
- if self.get_navigate_mode() is not None:
- # we don't want to rotate if we are zooming/panning
- # from the toolbar
- return
- if self.M is None:
- return
- x, y = event.xdata, event.ydata
- # In case the mouse is out of bounds.
- if x is None or event.inaxes != self:
- return
- dx, dy = x - self._sx, y - self._sy
- w = self._pseudo_w
- h = self._pseudo_h
- # Rotation
- if self.button_pressed in self._rotate_btn:
- # rotate viewing point
- # get the x and y pixel coords
- if dx == 0 and dy == 0:
- return
- roll = np.deg2rad(self.roll)
- delev = -(dy/h)*180*np.cos(roll) + (dx/w)*180*np.sin(roll)
- dazim = -(dy/h)*180*np.sin(roll) - (dx/w)*180*np.cos(roll)
- elev = self.elev + delev
- azim = self.azim + dazim
- self.view_init(elev=elev, azim=azim, roll=roll, share=True)
- self.stale = True
- # Pan
- elif self.button_pressed in self._pan_btn:
- # Start the pan event with pixel coordinates
- px, py = self.transData.transform([self._sx, self._sy])
- self.start_pan(px, py, 2)
- # pan view (takes pixel coordinate input)
- self.drag_pan(2, None, event.x, event.y)
- self.end_pan()
- # Zoom
- elif self.button_pressed in self._zoom_btn:
- # zoom view (dragging down zooms in)
- scale = h/(h - dy)
- self._scale_axis_limits(scale, scale, scale)
- # Store the event coordinates for the next time through.
- self._sx, self._sy = x, y
- # Always request a draw update at the end of interaction
- self.figure.canvas.draw_idle()
- def drag_pan(self, button, key, x, y):
- # docstring inherited
- # Get the coordinates from the move event
- p = self._pan_start
- (xdata, ydata), (xdata_start, ydata_start) = p.trans_inverse.transform(
- [(x, y), (p.x, p.y)])
- self._sx, self._sy = xdata, ydata
- # Calling start_pan() to set the x/y of this event as the starting
- # move location for the next event
- self.start_pan(x, y, button)
- du, dv = xdata - xdata_start, ydata - ydata_start
- dw = 0
- if key == 'x':
- dv = 0
- elif key == 'y':
- du = 0
- if du == 0 and dv == 0:
- return
- # Transform the pan from the view axes to the data axes
- R = np.array([self._view_u, self._view_v, self._view_w])
- R = -R / self._box_aspect * self._dist
- duvw_projected = R.T @ np.array([du, dv, dw])
- # Calculate pan distance
- minx, maxx, miny, maxy, minz, maxz = self.get_w_lims()
- dx = (maxx - minx) * duvw_projected[0]
- dy = (maxy - miny) * duvw_projected[1]
- dz = (maxz - minz) * duvw_projected[2]
- # Set the new axis limits
- self.set_xlim3d(minx + dx, maxx + dx)
- self.set_ylim3d(miny + dy, maxy + dy)
- self.set_zlim3d(minz + dz, maxz + dz)
- def _calc_view_axes(self, eye):
- """
- Get the unit vectors for the viewing axes in data coordinates.
- `u` is towards the right of the screen
- `v` is towards the top of the screen
- `w` is out of the screen
- """
- elev_rad = np.deg2rad(art3d._norm_angle(self.elev))
- roll_rad = np.deg2rad(art3d._norm_angle(self.roll))
- # Look into the middle of the world coordinates
- R = 0.5 * self._roll_to_vertical(self._box_aspect)
- # Define which axis should be vertical. A negative value
- # indicates the plot is upside down and therefore the values
- # have been reversed:
- V = np.zeros(3)
- V[self._vertical_axis] = -1 if abs(elev_rad) > np.pi/2 else 1
- u, v, w = proj3d._view_axes(eye, R, V, roll_rad)
- return u, v, w
- def _set_view_from_bbox(self, bbox, direction='in',
- mode=None, twinx=False, twiny=False):
- """
- Zoom in or out of the bounding box.
- Will center the view in the center of the bounding box, and zoom by
- the ratio of the size of the bounding box to the size of the Axes3D.
- """
- (start_x, start_y, stop_x, stop_y) = bbox
- if mode == 'x':
- start_y = self.bbox.min[1]
- stop_y = self.bbox.max[1]
- elif mode == 'y':
- start_x = self.bbox.min[0]
- stop_x = self.bbox.max[0]
- # Clip to bounding box limits
- start_x, stop_x = np.clip(sorted([start_x, stop_x]),
- self.bbox.min[0], self.bbox.max[0])
- start_y, stop_y = np.clip(sorted([start_y, stop_y]),
- self.bbox.min[1], self.bbox.max[1])
- # Move the center of the view to the center of the bbox
- zoom_center_x = (start_x + stop_x)/2
- zoom_center_y = (start_y + stop_y)/2
- ax_center_x = (self.bbox.max[0] + self.bbox.min[0])/2
- ax_center_y = (self.bbox.max[1] + self.bbox.min[1])/2
- self.start_pan(zoom_center_x, zoom_center_y, 2)
- self.drag_pan(2, None, ax_center_x, ax_center_y)
- self.end_pan()
- # Calculate zoom level
- dx = abs(start_x - stop_x)
- dy = abs(start_y - stop_y)
- scale_u = dx / (self.bbox.max[0] - self.bbox.min[0])
- scale_v = dy / (self.bbox.max[1] - self.bbox.min[1])
- # Keep aspect ratios equal
- scale = max(scale_u, scale_v)
- # Zoom out
- if direction == 'out':
- scale = 1 / scale
- self._zoom_data_limits(scale, scale, scale)
- def _zoom_data_limits(self, scale_u, scale_v, scale_w):
- """
- Zoom in or out of a 3D plot.
- Will scale the data limits by the scale factors. These will be
- transformed to the x, y, z data axes based on the current view angles.
- A scale factor > 1 zooms out and a scale factor < 1 zooms in.
- For an axes that has had its aspect ratio set to 'equal', 'equalxy',
- 'equalyz', or 'equalxz', the relevant axes are constrained to zoom
- equally.
- Parameters
- ----------
- scale_u : float
- Scale factor for the u view axis (view screen horizontal).
- scale_v : float
- Scale factor for the v view axis (view screen vertical).
- scale_w : float
- Scale factor for the w view axis (view screen depth).
- """
- scale = np.array([scale_u, scale_v, scale_w])
- # Only perform frame conversion if unequal scale factors
- if not np.allclose(scale, scale_u):
- # Convert the scale factors from the view frame to the data frame
- R = np.array([self._view_u, self._view_v, self._view_w])
- S = scale * np.eye(3)
- scale = np.linalg.norm(R.T @ S, axis=1)
- # Set the constrained scale factors to the factor closest to 1
- if self._aspect in ('equal', 'equalxy', 'equalxz', 'equalyz'):
- ax_idxs = self._equal_aspect_axis_indices(self._aspect)
- min_ax_idxs = np.argmin(np.abs(scale[ax_idxs] - 1))
- scale[ax_idxs] = scale[ax_idxs][min_ax_idxs]
- self._scale_axis_limits(scale[0], scale[1], scale[2])
- def _scale_axis_limits(self, scale_x, scale_y, scale_z):
- """
- Keeping the center of the x, y, and z data axes fixed, scale their
- limits by scale factors. A scale factor > 1 zooms out and a scale
- factor < 1 zooms in.
- Parameters
- ----------
- scale_x : float
- Scale factor for the x data axis.
- scale_y : float
- Scale factor for the y data axis.
- scale_z : float
- Scale factor for the z data axis.
- """
- # Get the axis centers and ranges
- cx, cy, cz, dx, dy, dz = self._get_w_centers_ranges()
- # Set the scaled axis limits
- self.set_xlim3d(cx - dx*scale_x/2, cx + dx*scale_x/2)
- self.set_ylim3d(cy - dy*scale_y/2, cy + dy*scale_y/2)
- self.set_zlim3d(cz - dz*scale_z/2, cz + dz*scale_z/2)
- def _get_w_centers_ranges(self):
- """Get 3D world centers and axis ranges."""
- # Calculate center of axis limits
- minx, maxx, miny, maxy, minz, maxz = self.get_w_lims()
- cx = (maxx + minx)/2
- cy = (maxy + miny)/2
- cz = (maxz + minz)/2
- # Calculate range of axis limits
- dx = (maxx - minx)
- dy = (maxy - miny)
- dz = (maxz - minz)
- return cx, cy, cz, dx, dy, dz
- def set_zlabel(self, zlabel, fontdict=None, labelpad=None, **kwargs):
- """
- Set zlabel. See doc for `.set_ylabel` for description.
- """
- if labelpad is not None:
- self.zaxis.labelpad = labelpad
- return self.zaxis.set_label_text(zlabel, fontdict, **kwargs)
- def get_zlabel(self):
- """
- Get the z-label text string.
- """
- label = self.zaxis.get_label()
- return label.get_text()
- # Axes rectangle characteristics
- # The frame_on methods are not available for 3D axes.
- # Python will raise a TypeError if they are called.
- get_frame_on = None
- set_frame_on = None
- def grid(self, visible=True, **kwargs):
- """
- Set / unset 3D grid.
- .. note::
- Currently, this function does not behave the same as
- `.axes.Axes.grid`, but it is intended to eventually support that
- behavior.
- """
- # TODO: Operate on each axes separately
- if len(kwargs):
- visible = True
- self._draw_grid = visible
- self.stale = True
- def tick_params(self, axis='both', **kwargs):
- """
- Convenience method for changing the appearance of ticks and
- tick labels.
- See `.Axes.tick_params` for full documentation. Because this function
- applies to 3D Axes, *axis* can also be set to 'z', and setting *axis*
- to 'both' autoscales all three axes.
- Also, because of how Axes3D objects are drawn very differently
- from regular 2D axes, some of these settings may have
- ambiguous meaning. For simplicity, the 'z' axis will
- accept settings as if it was like the 'y' axis.
- .. note::
- Axes3D currently ignores some of these settings.
- """
- _api.check_in_list(['x', 'y', 'z', 'both'], axis=axis)
- if axis in ['x', 'y', 'both']:
- super().tick_params(axis, **kwargs)
- if axis in ['z', 'both']:
- zkw = dict(kwargs)
- zkw.pop('top', None)
- zkw.pop('bottom', None)
- zkw.pop('labeltop', None)
- zkw.pop('labelbottom', None)
- self.zaxis.set_tick_params(**zkw)
- # data limits, ticks, tick labels, and formatting
- def invert_zaxis(self):
- """
- Invert the z-axis.
- See Also
- --------
- zaxis_inverted
- get_zlim, set_zlim
- get_zbound, set_zbound
- """
- bottom, top = self.get_zlim()
- self.set_zlim(top, bottom, auto=None)
- zaxis_inverted = _axis_method_wrapper("zaxis", "get_inverted")
- def get_zbound(self):
- """
- Return the lower and upper z-axis bounds, in increasing order.
- See Also
- --------
- set_zbound
- get_zlim, set_zlim
- invert_zaxis, zaxis_inverted
- """
- bottom, top = self.get_zlim()
- if bottom < top:
- return bottom, top
- else:
- return top, bottom
- def set_zbound(self, lower=None, upper=None):
- """
- Set the lower and upper numerical bounds of the z-axis.
- This method will honor axes inversion regardless of parameter order.
- It will not change the autoscaling setting (`.get_autoscalez_on()`).
- Parameters
- ----------
- lower, upper : float or None
- The lower and upper bounds. If *None*, the respective axis bound
- is not modified.
- See Also
- --------
- get_zbound
- get_zlim, set_zlim
- invert_zaxis, zaxis_inverted
- """
- if upper is None and np.iterable(lower):
- lower, upper = lower
- old_lower, old_upper = self.get_zbound()
- if lower is None:
- lower = old_lower
- if upper is None:
- upper = old_upper
- self.set_zlim(sorted((lower, upper),
- reverse=bool(self.zaxis_inverted())),
- auto=None)
- def text(self, x, y, z, s, zdir=None, **kwargs):
- """
- Add the text *s* to the 3D Axes at location *x*, *y*, *z* in data coordinates.
- Parameters
- ----------
- x, y, z : float
- The position to place the text.
- s : str
- The text.
- zdir : {'x', 'y', 'z', 3-tuple}, optional
- The direction to be used as the z-direction. Default: 'z'.
- See `.get_dir_vector` for a description of the values.
- **kwargs
- Other arguments are forwarded to `matplotlib.axes.Axes.text`.
- Returns
- -------
- `.Text3D`
- The created `.Text3D` instance.
- """
- text = super().text(x, y, s, **kwargs)
- art3d.text_2d_to_3d(text, z, zdir)
- return text
- text3D = text
- text2D = Axes.text
- def plot(self, xs, ys, *args, zdir='z', **kwargs):
- """
- Plot 2D or 3D data.
- Parameters
- ----------
- xs : 1D array-like
- x coordinates of vertices.
- ys : 1D array-like
- y coordinates of vertices.
- zs : float or 1D array-like
- z coordinates of vertices; either one for all points or one for
- each point.
- zdir : {'x', 'y', 'z'}, default: 'z'
- When plotting 2D data, the direction to use as z.
- **kwargs
- Other arguments are forwarded to `matplotlib.axes.Axes.plot`.
- """
- had_data = self.has_data()
- # `zs` can be passed positionally or as keyword; checking whether
- # args[0] is a string matches the behavior of 2D `plot` (via
- # `_process_plot_var_args`).
- if args and not isinstance(args[0], str):
- zs, *args = args
- if 'zs' in kwargs:
- raise TypeError("plot() for multiple values for argument 'z'")
- else:
- zs = kwargs.pop('zs', 0)
- # Match length
- zs = np.broadcast_to(zs, np.shape(xs))
- lines = super().plot(xs, ys, *args, **kwargs)
- for line in lines:
- art3d.line_2d_to_3d(line, zs=zs, zdir=zdir)
- xs, ys, zs = art3d.juggle_axes(xs, ys, zs, zdir)
- self.auto_scale_xyz(xs, ys, zs, had_data)
- return lines
- plot3D = plot
- def plot_surface(self, X, Y, Z, *, norm=None, vmin=None,
- vmax=None, lightsource=None, **kwargs):
- """
- Create a surface plot.
- By default, it will be colored in shades of a solid color, but it also
- supports colormapping by supplying the *cmap* argument.
- .. note::
- The *rcount* and *ccount* kwargs, which both default to 50,
- determine the maximum number of samples used in each direction. If
- the input data is larger, it will be downsampled (by slicing) to
- these numbers of points.
- .. note::
- To maximize rendering speed consider setting *rstride* and *cstride*
- to divisors of the number of rows minus 1 and columns minus 1
- respectively. For example, given 51 rows rstride can be any of the
- divisors of 50.
- Similarly, a setting of *rstride* and *cstride* equal to 1 (or
- *rcount* and *ccount* equal the number of rows and columns) can use
- the optimized path.
- Parameters
- ----------
- X, Y, Z : 2D arrays
- Data values.
- rcount, ccount : int
- Maximum number of samples used in each direction. If the input
- data is larger, it will be downsampled (by slicing) to these
- numbers of points. Defaults to 50.
- rstride, cstride : int
- Downsampling stride in each direction. These arguments are
- mutually exclusive with *rcount* and *ccount*. If only one of
- *rstride* or *cstride* is set, the other defaults to 10.
- 'classic' mode uses a default of ``rstride = cstride = 10`` instead
- of the new default of ``rcount = ccount = 50``.
- color : color-like
- Color of the surface patches.
- cmap : Colormap
- Colormap of the surface patches.
- facecolors : array-like of colors.
- Colors of each individual patch.
- norm : Normalize
- Normalization for the colormap.
- vmin, vmax : float
- Bounds for the normalization.
- shade : bool, default: True
- Whether to shade the facecolors. Shading is always disabled when
- *cmap* is specified.
- lightsource : `~matplotlib.colors.LightSource`
- The lightsource to use when *shade* is True.
- **kwargs
- Other keyword arguments are forwarded to `.Poly3DCollection`.
- """
- had_data = self.has_data()
- if Z.ndim != 2:
- raise ValueError("Argument Z must be 2-dimensional.")
- Z = cbook._to_unmasked_float_array(Z)
- X, Y, Z = np.broadcast_arrays(X, Y, Z)
- rows, cols = Z.shape
- has_stride = 'rstride' in kwargs or 'cstride' in kwargs
- has_count = 'rcount' in kwargs or 'ccount' in kwargs
- if has_stride and has_count:
- raise ValueError("Cannot specify both stride and count arguments")
- rstride = kwargs.pop('rstride', 10)
- cstride = kwargs.pop('cstride', 10)
- rcount = kwargs.pop('rcount', 50)
- ccount = kwargs.pop('ccount', 50)
- if mpl.rcParams['_internal.classic_mode']:
- # Strides have priority over counts in classic mode.
- # So, only compute strides from counts
- # if counts were explicitly given
- compute_strides = has_count
- else:
- # If the strides are provided then it has priority.
- # Otherwise, compute the strides from the counts.
- compute_strides = not has_stride
- if compute_strides:
- rstride = int(max(np.ceil(rows / rcount), 1))
- cstride = int(max(np.ceil(cols / ccount), 1))
- fcolors = kwargs.pop('facecolors', None)
- cmap = kwargs.get('cmap', None)
- shade = kwargs.pop('shade', cmap is None)
- if shade is None:
- raise ValueError("shade cannot be None.")
- colset = [] # the sampled facecolor
- if (rows - 1) % rstride == 0 and \
- (cols - 1) % cstride == 0 and \
- fcolors is None:
- polys = np.stack(
- [cbook._array_patch_perimeters(a, rstride, cstride)
- for a in (X, Y, Z)],
- axis=-1)
- else:
- # evenly spaced, and including both endpoints
- row_inds = list(range(0, rows-1, rstride)) + [rows-1]
- col_inds = list(range(0, cols-1, cstride)) + [cols-1]
- polys = []
- for rs, rs_next in zip(row_inds[:-1], row_inds[1:]):
- for cs, cs_next in zip(col_inds[:-1], col_inds[1:]):
- ps = [
- # +1 ensures we share edges between polygons
- cbook._array_perimeter(a[rs:rs_next+1, cs:cs_next+1])
- for a in (X, Y, Z)
- ]
- # ps = np.stack(ps, axis=-1)
- ps = np.array(ps).T
- polys.append(ps)
- if fcolors is not None:
- colset.append(fcolors[rs][cs])
- # In cases where there are non-finite values in the data (possibly NaNs from
- # masked arrays), artifacts can be introduced. Here check whether such values
- # are present and remove them.
- if not isinstance(polys, np.ndarray) or not np.isfinite(polys).all():
- new_polys = []
- new_colset = []
- # Depending on fcolors, colset is either an empty list or has as
- # many elements as polys. In the former case new_colset results in
- # a list with None entries, that is discarded later.
- for p, col in itertools.zip_longest(polys, colset):
- new_poly = np.array(p)[np.isfinite(p).all(axis=1)]
- if len(new_poly):
- new_polys.append(new_poly)
- new_colset.append(col)
- # Replace previous polys and, if fcolors is not None, colset
- polys = new_polys
- if fcolors is not None:
- colset = new_colset
- # note that the striding causes some polygons to have more coordinates
- # than others
- if fcolors is not None:
- polyc = art3d.Poly3DCollection(
- polys, edgecolors=colset, facecolors=colset, shade=shade,
- lightsource=lightsource, **kwargs)
- elif cmap:
- polyc = art3d.Poly3DCollection(polys, **kwargs)
- # can't always vectorize, because polys might be jagged
- if isinstance(polys, np.ndarray):
- avg_z = polys[..., 2].mean(axis=-1)
- else:
- avg_z = np.array([ps[:, 2].mean() for ps in polys])
- polyc.set_array(avg_z)
- if vmin is not None or vmax is not None:
- polyc.set_clim(vmin, vmax)
- if norm is not None:
- polyc.set_norm(norm)
- else:
- color = kwargs.pop('color', None)
- if color is None:
- color = self._get_lines.get_next_color()
- color = np.array(mcolors.to_rgba(color))
- polyc = art3d.Poly3DCollection(
- polys, facecolors=color, shade=shade,
- lightsource=lightsource, **kwargs)
- self.add_collection(polyc)
- self.auto_scale_xyz(X, Y, Z, had_data)
- return polyc
- def plot_wireframe(self, X, Y, Z, **kwargs):
- """
- Plot a 3D wireframe.
- .. note::
- The *rcount* and *ccount* kwargs, which both default to 50,
- determine the maximum number of samples used in each direction. If
- the input data is larger, it will be downsampled (by slicing) to
- these numbers of points.
- Parameters
- ----------
- X, Y, Z : 2D arrays
- Data values.
- rcount, ccount : int
- Maximum number of samples used in each direction. If the input
- data is larger, it will be downsampled (by slicing) to these
- numbers of points. Setting a count to zero causes the data to be
- not sampled in the corresponding direction, producing a 3D line
- plot rather than a wireframe plot. Defaults to 50.
- rstride, cstride : int
- Downsampling stride in each direction. These arguments are
- mutually exclusive with *rcount* and *ccount*. If only one of
- *rstride* or *cstride* is set, the other defaults to 1. Setting a
- stride to zero causes the data to be not sampled in the
- corresponding direction, producing a 3D line plot rather than a
- wireframe plot.
- 'classic' mode uses a default of ``rstride = cstride = 1`` instead
- of the new default of ``rcount = ccount = 50``.
- **kwargs
- Other keyword arguments are forwarded to `.Line3DCollection`.
- """
- had_data = self.has_data()
- if Z.ndim != 2:
- raise ValueError("Argument Z must be 2-dimensional.")
- # FIXME: Support masked arrays
- X, Y, Z = np.broadcast_arrays(X, Y, Z)
- rows, cols = Z.shape
- has_stride = 'rstride' in kwargs or 'cstride' in kwargs
- has_count = 'rcount' in kwargs or 'ccount' in kwargs
- if has_stride and has_count:
- raise ValueError("Cannot specify both stride and count arguments")
- rstride = kwargs.pop('rstride', 1)
- cstride = kwargs.pop('cstride', 1)
- rcount = kwargs.pop('rcount', 50)
- ccount = kwargs.pop('ccount', 50)
- if mpl.rcParams['_internal.classic_mode']:
- # Strides have priority over counts in classic mode.
- # So, only compute strides from counts
- # if counts were explicitly given
- if has_count:
- rstride = int(max(np.ceil(rows / rcount), 1)) if rcount else 0
- cstride = int(max(np.ceil(cols / ccount), 1)) if ccount else 0
- else:
- # If the strides are provided then it has priority.
- # Otherwise, compute the strides from the counts.
- if not has_stride:
- rstride = int(max(np.ceil(rows / rcount), 1)) if rcount else 0
- cstride = int(max(np.ceil(cols / ccount), 1)) if ccount else 0
- # We want two sets of lines, one running along the "rows" of
- # Z and another set of lines running along the "columns" of Z.
- # This transpose will make it easy to obtain the columns.
- tX, tY, tZ = np.transpose(X), np.transpose(Y), np.transpose(Z)
- if rstride:
- rii = list(range(0, rows, rstride))
- # Add the last index only if needed
- if rows > 0 and rii[-1] != (rows - 1):
- rii += [rows-1]
- else:
- rii = []
- if cstride:
- cii = list(range(0, cols, cstride))
- # Add the last index only if needed
- if cols > 0 and cii[-1] != (cols - 1):
- cii += [cols-1]
- else:
- cii = []
- if rstride == 0 and cstride == 0:
- raise ValueError("Either rstride or cstride must be non zero")
- # If the inputs were empty, then just
- # reset everything.
- if Z.size == 0:
- rii = []
- cii = []
- xlines = [X[i] for i in rii]
- ylines = [Y[i] for i in rii]
- zlines = [Z[i] for i in rii]
- txlines = [tX[i] for i in cii]
- tylines = [tY[i] for i in cii]
- tzlines = [tZ[i] for i in cii]
- lines = ([list(zip(xl, yl, zl))
- for xl, yl, zl in zip(xlines, ylines, zlines)]
- + [list(zip(xl, yl, zl))
- for xl, yl, zl in zip(txlines, tylines, tzlines)])
- linec = art3d.Line3DCollection(lines, **kwargs)
- self.add_collection(linec)
- self.auto_scale_xyz(X, Y, Z, had_data)
- return linec
- def plot_trisurf(self, *args, color=None, norm=None, vmin=None, vmax=None,
- lightsource=None, **kwargs):
- """
- Plot a triangulated surface.
- The (optional) triangulation can be specified in one of two ways;
- either::
- plot_trisurf(triangulation, ...)
- where triangulation is a `~matplotlib.tri.Triangulation` object, or::
- plot_trisurf(X, Y, ...)
- plot_trisurf(X, Y, triangles, ...)
- plot_trisurf(X, Y, triangles=triangles, ...)
- in which case a Triangulation object will be created. See
- `.Triangulation` for an explanation of these possibilities.
- The remaining arguments are::
- plot_trisurf(..., Z)
- where *Z* is the array of values to contour, one per point
- in the triangulation.
- Parameters
- ----------
- X, Y, Z : array-like
- Data values as 1D arrays.
- color
- Color of the surface patches.
- cmap
- A colormap for the surface patches.
- norm : Normalize
- An instance of Normalize to map values to colors.
- vmin, vmax : float, default: None
- Minimum and maximum value to map.
- shade : bool, default: True
- Whether to shade the facecolors. Shading is always disabled when
- *cmap* is specified.
- lightsource : `~matplotlib.colors.LightSource`
- The lightsource to use when *shade* is True.
- **kwargs
- All other keyword arguments are passed on to
- :class:`~mpl_toolkits.mplot3d.art3d.Poly3DCollection`
- Examples
- --------
- .. plot:: gallery/mplot3d/trisurf3d.py
- .. plot:: gallery/mplot3d/trisurf3d_2.py
- """
- had_data = self.has_data()
- # TODO: Support custom face colours
- if color is None:
- color = self._get_lines.get_next_color()
- color = np.array(mcolors.to_rgba(color))
- cmap = kwargs.get('cmap', None)
- shade = kwargs.pop('shade', cmap is None)
- tri, args, kwargs = \
- Triangulation.get_from_args_and_kwargs(*args, **kwargs)
- try:
- z = kwargs.pop('Z')
- except KeyError:
- # We do this so Z doesn't get passed as an arg to PolyCollection
- z, *args = args
- z = np.asarray(z)
- triangles = tri.get_masked_triangles()
- xt = tri.x[triangles]
- yt = tri.y[triangles]
- zt = z[triangles]
- verts = np.stack((xt, yt, zt), axis=-1)
- if cmap:
- polyc = art3d.Poly3DCollection(verts, *args, **kwargs)
- # average over the three points of each triangle
- avg_z = verts[:, :, 2].mean(axis=1)
- polyc.set_array(avg_z)
- if vmin is not None or vmax is not None:
- polyc.set_clim(vmin, vmax)
- if norm is not None:
- polyc.set_norm(norm)
- else:
- polyc = art3d.Poly3DCollection(
- verts, *args, shade=shade, lightsource=lightsource,
- facecolors=color, **kwargs)
- self.add_collection(polyc)
- self.auto_scale_xyz(tri.x, tri.y, z, had_data)
- return polyc
- def _3d_extend_contour(self, cset, stride=5):
- """
- Extend a contour in 3D by creating
- """
- dz = (cset.levels[1] - cset.levels[0]) / 2
- polyverts = []
- colors = []
- for idx, level in enumerate(cset.levels):
- path = cset.get_paths()[idx]
- subpaths = [*path._iter_connected_components()]
- color = cset.get_edgecolor()[idx]
- top = art3d._paths_to_3d_segments(subpaths, level - dz)
- bot = art3d._paths_to_3d_segments(subpaths, level + dz)
- if not len(top[0]):
- continue
- nsteps = max(round(len(top[0]) / stride), 2)
- stepsize = (len(top[0]) - 1) / (nsteps - 1)
- polyverts.extend([
- (top[0][round(i * stepsize)], top[0][round((i + 1) * stepsize)],
- bot[0][round((i + 1) * stepsize)], bot[0][round(i * stepsize)])
- for i in range(round(nsteps) - 1)])
- colors.extend([color] * (round(nsteps) - 1))
- self.add_collection3d(art3d.Poly3DCollection(
- np.array(polyverts), # All polygons have 4 vertices, so vectorize.
- facecolors=colors, edgecolors=colors, shade=True))
- cset.remove()
- def add_contour_set(
- self, cset, extend3d=False, stride=5, zdir='z', offset=None):
- zdir = '-' + zdir
- if extend3d:
- self._3d_extend_contour(cset, stride)
- else:
- art3d.collection_2d_to_3d(
- cset, zs=offset if offset is not None else cset.levels, zdir=zdir)
- def add_contourf_set(self, cset, zdir='z', offset=None):
- self._add_contourf_set(cset, zdir=zdir, offset=offset)
- def _add_contourf_set(self, cset, zdir='z', offset=None):
- """
- Returns
- -------
- levels : `numpy.ndarray`
- Levels at which the filled contours are added.
- """
- zdir = '-' + zdir
- midpoints = cset.levels[:-1] + np.diff(cset.levels) / 2
- # Linearly interpolate to get levels for any extensions
- if cset._extend_min:
- min_level = cset.levels[0] - np.diff(cset.levels[:2]) / 2
- midpoints = np.insert(midpoints, 0, min_level)
- if cset._extend_max:
- max_level = cset.levels[-1] + np.diff(cset.levels[-2:]) / 2
- midpoints = np.append(midpoints, max_level)
- art3d.collection_2d_to_3d(
- cset, zs=offset if offset is not None else midpoints, zdir=zdir)
- return midpoints
- @_preprocess_data()
- def contour(self, X, Y, Z, *args,
- extend3d=False, stride=5, zdir='z', offset=None, **kwargs):
- """
- Create a 3D contour plot.
- Parameters
- ----------
- X, Y, Z : array-like,
- Input data. See `.Axes.contour` for supported data shapes.
- extend3d : bool, default: False
- Whether to extend contour in 3D.
- stride : int
- Step size for extending contour.
- zdir : {'x', 'y', 'z'}, default: 'z'
- The direction to use.
- offset : float, optional
- If specified, plot a projection of the contour lines at this
- position in a plane normal to *zdir*.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- *args, **kwargs
- Other arguments are forwarded to `matplotlib.axes.Axes.contour`.
- Returns
- -------
- matplotlib.contour.QuadContourSet
- """
- had_data = self.has_data()
- jX, jY, jZ = art3d.rotate_axes(X, Y, Z, zdir)
- cset = super().contour(jX, jY, jZ, *args, **kwargs)
- self.add_contour_set(cset, extend3d, stride, zdir, offset)
- self.auto_scale_xyz(X, Y, Z, had_data)
- return cset
- contour3D = contour
- @_preprocess_data()
- def tricontour(self, *args,
- extend3d=False, stride=5, zdir='z', offset=None, **kwargs):
- """
- Create a 3D contour plot.
- .. note::
- This method currently produces incorrect output due to a
- longstanding bug in 3D PolyCollection rendering.
- Parameters
- ----------
- X, Y, Z : array-like
- Input data. See `.Axes.tricontour` for supported data shapes.
- extend3d : bool, default: False
- Whether to extend contour in 3D.
- stride : int
- Step size for extending contour.
- zdir : {'x', 'y', 'z'}, default: 'z'
- The direction to use.
- offset : float, optional
- If specified, plot a projection of the contour lines at this
- position in a plane normal to *zdir*.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- *args, **kwargs
- Other arguments are forwarded to `matplotlib.axes.Axes.tricontour`.
- Returns
- -------
- matplotlib.tri._tricontour.TriContourSet
- """
- had_data = self.has_data()
- tri, args, kwargs = Triangulation.get_from_args_and_kwargs(
- *args, **kwargs)
- X = tri.x
- Y = tri.y
- if 'Z' in kwargs:
- Z = kwargs.pop('Z')
- else:
- # We do this so Z doesn't get passed as an arg to Axes.tricontour
- Z, *args = args
- jX, jY, jZ = art3d.rotate_axes(X, Y, Z, zdir)
- tri = Triangulation(jX, jY, tri.triangles, tri.mask)
- cset = super().tricontour(tri, jZ, *args, **kwargs)
- self.add_contour_set(cset, extend3d, stride, zdir, offset)
- self.auto_scale_xyz(X, Y, Z, had_data)
- return cset
- def _auto_scale_contourf(self, X, Y, Z, zdir, levels, had_data):
- # Autoscale in the zdir based on the levels added, which are
- # different from data range if any contour extensions are present
- dim_vals = {'x': X, 'y': Y, 'z': Z, zdir: levels}
- # Input data and levels have different sizes, but auto_scale_xyz
- # expected same-size input, so manually take min/max limits
- limits = [(np.nanmin(dim_vals[dim]), np.nanmax(dim_vals[dim]))
- for dim in ['x', 'y', 'z']]
- self.auto_scale_xyz(*limits, had_data)
- @_preprocess_data()
- def contourf(self, X, Y, Z, *args, zdir='z', offset=None, **kwargs):
- """
- Create a 3D filled contour plot.
- Parameters
- ----------
- X, Y, Z : array-like
- Input data. See `.Axes.contourf` for supported data shapes.
- zdir : {'x', 'y', 'z'}, default: 'z'
- The direction to use.
- offset : float, optional
- If specified, plot a projection of the contour lines at this
- position in a plane normal to *zdir*.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- *args, **kwargs
- Other arguments are forwarded to `matplotlib.axes.Axes.contourf`.
- Returns
- -------
- matplotlib.contour.QuadContourSet
- """
- had_data = self.has_data()
- jX, jY, jZ = art3d.rotate_axes(X, Y, Z, zdir)
- cset = super().contourf(jX, jY, jZ, *args, **kwargs)
- levels = self._add_contourf_set(cset, zdir, offset)
- self._auto_scale_contourf(X, Y, Z, zdir, levels, had_data)
- return cset
- contourf3D = contourf
- @_preprocess_data()
- def tricontourf(self, *args, zdir='z', offset=None, **kwargs):
- """
- Create a 3D filled contour plot.
- .. note::
- This method currently produces incorrect output due to a
- longstanding bug in 3D PolyCollection rendering.
- Parameters
- ----------
- X, Y, Z : array-like
- Input data. See `.Axes.tricontourf` for supported data shapes.
- zdir : {'x', 'y', 'z'}, default: 'z'
- The direction to use.
- offset : float, optional
- If specified, plot a projection of the contour lines at this
- position in a plane normal to zdir.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- *args, **kwargs
- Other arguments are forwarded to
- `matplotlib.axes.Axes.tricontourf`.
- Returns
- -------
- matplotlib.tri._tricontour.TriContourSet
- """
- had_data = self.has_data()
- tri, args, kwargs = Triangulation.get_from_args_and_kwargs(
- *args, **kwargs)
- X = tri.x
- Y = tri.y
- if 'Z' in kwargs:
- Z = kwargs.pop('Z')
- else:
- # We do this so Z doesn't get passed as an arg to Axes.tricontourf
- Z, *args = args
- jX, jY, jZ = art3d.rotate_axes(X, Y, Z, zdir)
- tri = Triangulation(jX, jY, tri.triangles, tri.mask)
- cset = super().tricontourf(tri, jZ, *args, **kwargs)
- levels = self._add_contourf_set(cset, zdir, offset)
- self._auto_scale_contourf(X, Y, Z, zdir, levels, had_data)
- return cset
- def add_collection3d(self, col, zs=0, zdir='z'):
- """
- Add a 3D collection object to the plot.
- 2D collection types are converted to a 3D version by
- modifying the object and adding z coordinate information.
- Supported are:
- - PolyCollection
- - LineCollection
- - PatchCollection
- """
- zvals = np.atleast_1d(zs)
- zsortval = (np.min(zvals) if zvals.size
- else 0) # FIXME: arbitrary default
- # FIXME: use issubclass() (although, then a 3D collection
- # object would also pass.) Maybe have a collection3d
- # abstract class to test for and exclude?
- if type(col) is mcoll.PolyCollection:
- art3d.poly_collection_2d_to_3d(col, zs=zs, zdir=zdir)
- col.set_sort_zpos(zsortval)
- elif type(col) is mcoll.LineCollection:
- art3d.line_collection_2d_to_3d(col, zs=zs, zdir=zdir)
- col.set_sort_zpos(zsortval)
- elif type(col) is mcoll.PatchCollection:
- art3d.patch_collection_2d_to_3d(col, zs=zs, zdir=zdir)
- col.set_sort_zpos(zsortval)
- collection = super().add_collection(col)
- return collection
- @_preprocess_data(replace_names=["xs", "ys", "zs", "s",
- "edgecolors", "c", "facecolor",
- "facecolors", "color"])
- def scatter(self, xs, ys, zs=0, zdir='z', s=20, c=None, depthshade=True,
- *args, **kwargs):
- """
- Create a scatter plot.
- Parameters
- ----------
- xs, ys : array-like
- The data positions.
- zs : float or array-like, default: 0
- The z-positions. Either an array of the same length as *xs* and
- *ys* or a single value to place all points in the same plane.
- zdir : {'x', 'y', 'z', '-x', '-y', '-z'}, default: 'z'
- The axis direction for the *zs*. This is useful when plotting 2D
- data on a 3D Axes. The data must be passed as *xs*, *ys*. Setting
- *zdir* to 'y' then plots the data to the x-z-plane.
- See also :doc:`/gallery/mplot3d/2dcollections3d`.
- s : float or array-like, default: 20
- The marker size in points**2. Either an array of the same length
- as *xs* and *ys* or a single value to make all markers the same
- size.
- c : color, sequence, or sequence of colors, optional
- The marker color. Possible values:
- - A single color format string.
- - A sequence of colors of length n.
- - A sequence of n numbers to be mapped to colors using *cmap* and
- *norm*.
- - A 2D array in which the rows are RGB or RGBA.
- For more details see the *c* argument of `~.axes.Axes.scatter`.
- depthshade : bool, default: True
- Whether to shade the scatter markers to give the appearance of
- depth. Each call to ``scatter()`` will perform its depthshading
- independently.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- **kwargs
- All other keyword arguments are passed on to `~.axes.Axes.scatter`.
- Returns
- -------
- paths : `~matplotlib.collections.PathCollection`
- """
- had_data = self.has_data()
- zs_orig = zs
- xs, ys, zs = np.broadcast_arrays(
- *[np.ravel(np.ma.filled(t, np.nan)) for t in [xs, ys, zs]])
- s = np.ma.ravel(s) # This doesn't have to match x, y in size.
- xs, ys, zs, s, c, color = cbook.delete_masked_points(
- xs, ys, zs, s, c, kwargs.get('color', None)
- )
- if kwargs.get("color") is not None:
- kwargs['color'] = color
- # For xs and ys, 2D scatter() will do the copying.
- if np.may_share_memory(zs_orig, zs): # Avoid unnecessary copies.
- zs = zs.copy()
- patches = super().scatter(xs, ys, s=s, c=c, *args, **kwargs)
- art3d.patch_collection_2d_to_3d(patches, zs=zs, zdir=zdir,
- depthshade=depthshade)
- if self._zmargin < 0.05 and xs.size > 0:
- self.set_zmargin(0.05)
- self.auto_scale_xyz(xs, ys, zs, had_data)
- return patches
- scatter3D = scatter
- @_preprocess_data()
- def bar(self, left, height, zs=0, zdir='z', *args, **kwargs):
- """
- Add 2D bar(s).
- Parameters
- ----------
- left : 1D array-like
- The x coordinates of the left sides of the bars.
- height : 1D array-like
- The height of the bars.
- zs : float or 1D array-like
- Z coordinate of bars; if a single value is specified, it will be
- used for all bars.
- zdir : {'x', 'y', 'z'}, default: 'z'
- When plotting 2D data, the direction to use as z ('x', 'y' or 'z').
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- **kwargs
- Other keyword arguments are forwarded to
- `matplotlib.axes.Axes.bar`.
- Returns
- -------
- mpl_toolkits.mplot3d.art3d.Patch3DCollection
- """
- had_data = self.has_data()
- patches = super().bar(left, height, *args, **kwargs)
- zs = np.broadcast_to(zs, len(left))
- verts = []
- verts_zs = []
- for p, z in zip(patches, zs):
- vs = art3d._get_patch_verts(p)
- verts += vs.tolist()
- verts_zs += [z] * len(vs)
- art3d.patch_2d_to_3d(p, z, zdir)
- if 'alpha' in kwargs:
- p.set_alpha(kwargs['alpha'])
- if len(verts) > 0:
- # the following has to be skipped if verts is empty
- # NOTE: Bugs could still occur if len(verts) > 0,
- # but the "2nd dimension" is empty.
- xs, ys = zip(*verts)
- else:
- xs, ys = [], []
- xs, ys, verts_zs = art3d.juggle_axes(xs, ys, verts_zs, zdir)
- self.auto_scale_xyz(xs, ys, verts_zs, had_data)
- return patches
- @_preprocess_data()
- def bar3d(self, x, y, z, dx, dy, dz, color=None,
- zsort='average', shade=True, lightsource=None, *args, **kwargs):
- """
- Generate a 3D barplot.
- This method creates three-dimensional barplot where the width,
- depth, height, and color of the bars can all be uniquely set.
- Parameters
- ----------
- x, y, z : array-like
- The coordinates of the anchor point of the bars.
- dx, dy, dz : float or array-like
- The width, depth, and height of the bars, respectively.
- color : sequence of colors, optional
- The color of the bars can be specified globally or
- individually. This parameter can be:
- - A single color, to color all bars the same color.
- - An array of colors of length N bars, to color each bar
- independently.
- - An array of colors of length 6, to color the faces of the
- bars similarly.
- - An array of colors of length 6 * N bars, to color each face
- independently.
- When coloring the faces of the boxes specifically, this is
- the order of the coloring:
- 1. -Z (bottom of box)
- 2. +Z (top of box)
- 3. -Y
- 4. +Y
- 5. -X
- 6. +X
- zsort : str, optional
- The z-axis sorting scheme passed onto `~.art3d.Poly3DCollection`
- shade : bool, default: True
- When true, this shades the dark sides of the bars (relative
- to the plot's source of light).
- lightsource : `~matplotlib.colors.LightSource`
- The lightsource to use when *shade* is True.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- **kwargs
- Any additional keyword arguments are passed onto
- `~.art3d.Poly3DCollection`.
- Returns
- -------
- collection : `~.art3d.Poly3DCollection`
- A collection of three-dimensional polygons representing the bars.
- """
- had_data = self.has_data()
- x, y, z, dx, dy, dz = np.broadcast_arrays(
- np.atleast_1d(x), y, z, dx, dy, dz)
- minx = np.min(x)
- maxx = np.max(x + dx)
- miny = np.min(y)
- maxy = np.max(y + dy)
- minz = np.min(z)
- maxz = np.max(z + dz)
- # shape (6, 4, 3)
- # All faces are oriented facing outwards - when viewed from the
- # outside, their vertices are in a counterclockwise ordering.
- cuboid = np.array([
- # -z
- (
- (0, 0, 0),
- (0, 1, 0),
- (1, 1, 0),
- (1, 0, 0),
- ),
- # +z
- (
- (0, 0, 1),
- (1, 0, 1),
- (1, 1, 1),
- (0, 1, 1),
- ),
- # -y
- (
- (0, 0, 0),
- (1, 0, 0),
- (1, 0, 1),
- (0, 0, 1),
- ),
- # +y
- (
- (0, 1, 0),
- (0, 1, 1),
- (1, 1, 1),
- (1, 1, 0),
- ),
- # -x
- (
- (0, 0, 0),
- (0, 0, 1),
- (0, 1, 1),
- (0, 1, 0),
- ),
- # +x
- (
- (1, 0, 0),
- (1, 1, 0),
- (1, 1, 1),
- (1, 0, 1),
- ),
- ])
- # indexed by [bar, face, vertex, coord]
- polys = np.empty(x.shape + cuboid.shape)
- # handle each coordinate separately
- for i, p, dp in [(0, x, dx), (1, y, dy), (2, z, dz)]:
- p = p[..., np.newaxis, np.newaxis]
- dp = dp[..., np.newaxis, np.newaxis]
- polys[..., i] = p + dp * cuboid[..., i]
- # collapse the first two axes
- polys = polys.reshape((-1,) + polys.shape[2:])
- facecolors = []
- if color is None:
- color = [self._get_patches_for_fill.get_next_color()]
- color = list(mcolors.to_rgba_array(color))
- if len(color) == len(x):
- # bar colors specified, need to expand to number of faces
- for c in color:
- facecolors.extend([c] * 6)
- else:
- # a single color specified, or face colors specified explicitly
- facecolors = color
- if len(facecolors) < len(x):
- facecolors *= (6 * len(x))
- col = art3d.Poly3DCollection(polys,
- zsort=zsort,
- facecolors=facecolors,
- shade=shade,
- lightsource=lightsource,
- *args, **kwargs)
- self.add_collection(col)
- self.auto_scale_xyz((minx, maxx), (miny, maxy), (minz, maxz), had_data)
- return col
- def set_title(self, label, fontdict=None, loc='center', **kwargs):
- # docstring inherited
- ret = super().set_title(label, fontdict=fontdict, loc=loc, **kwargs)
- (x, y) = self.title.get_position()
- self.title.set_y(0.92 * y)
- return ret
- @_preprocess_data()
- def quiver(self, X, Y, Z, U, V, W, *,
- length=1, arrow_length_ratio=.3, pivot='tail', normalize=False,
- **kwargs):
- """
- Plot a 3D field of arrows.
- The arguments can be array-like or scalars, so long as they can be
- broadcast together. The arguments can also be masked arrays. If an
- element in any of argument is masked, then that corresponding quiver
- element will not be plotted.
- Parameters
- ----------
- X, Y, Z : array-like
- The x, y and z coordinates of the arrow locations (default is
- tail of arrow; see *pivot* kwarg).
- U, V, W : array-like
- The x, y and z components of the arrow vectors.
- length : float, default: 1
- The length of each quiver.
- arrow_length_ratio : float, default: 0.3
- The ratio of the arrow head with respect to the quiver.
- pivot : {'tail', 'middle', 'tip'}, default: 'tail'
- The part of the arrow that is at the grid point; the arrow
- rotates about this point, hence the name *pivot*.
- normalize : bool, default: False
- Whether all arrows are normalized to have the same length, or keep
- the lengths defined by *u*, *v*, and *w*.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- **kwargs
- Any additional keyword arguments are delegated to
- :class:`.Line3DCollection`
- """
- def calc_arrows(UVW):
- # get unit direction vector perpendicular to (u, v, w)
- x = UVW[:, 0]
- y = UVW[:, 1]
- norm = np.linalg.norm(UVW[:, :2], axis=1)
- x_p = np.divide(y, norm, where=norm != 0, out=np.zeros_like(x))
- y_p = np.divide(-x, norm, where=norm != 0, out=np.ones_like(x))
- # compute the two arrowhead direction unit vectors
- rangle = math.radians(15)
- c = math.cos(rangle)
- s = math.sin(rangle)
- # construct the rotation matrices of shape (3, 3, n)
- r13 = y_p * s
- r32 = x_p * s
- r12 = x_p * y_p * (1 - c)
- Rpos = np.array(
- [[c + (x_p ** 2) * (1 - c), r12, r13],
- [r12, c + (y_p ** 2) * (1 - c), -r32],
- [-r13, r32, np.full_like(x_p, c)]])
- # opposite rotation negates all the sin terms
- Rneg = Rpos.copy()
- Rneg[[0, 1, 2, 2], [2, 2, 0, 1]] *= -1
- # Batch n (3, 3) x (3) matrix multiplications ((3, 3, n) x (n, 3)).
- Rpos_vecs = np.einsum("ij...,...j->...i", Rpos, UVW)
- Rneg_vecs = np.einsum("ij...,...j->...i", Rneg, UVW)
- # Stack into (n, 2, 3) result.
- return np.stack([Rpos_vecs, Rneg_vecs], axis=1)
- had_data = self.has_data()
- input_args = [X, Y, Z, U, V, W]
- # extract the masks, if any
- masks = [k.mask for k in input_args
- if isinstance(k, np.ma.MaskedArray)]
- # broadcast to match the shape
- bcast = np.broadcast_arrays(*input_args, *masks)
- input_args = bcast[:6]
- masks = bcast[6:]
- if masks:
- # combine the masks into one
- mask = functools.reduce(np.logical_or, masks)
- # put mask on and compress
- input_args = [np.ma.array(k, mask=mask).compressed()
- for k in input_args]
- else:
- input_args = [np.ravel(k) for k in input_args]
- if any(len(v) == 0 for v in input_args):
- # No quivers, so just make an empty collection and return early
- linec = art3d.Line3DCollection([], **kwargs)
- self.add_collection(linec)
- return linec
- shaft_dt = np.array([0., length], dtype=float)
- arrow_dt = shaft_dt * arrow_length_ratio
- _api.check_in_list(['tail', 'middle', 'tip'], pivot=pivot)
- if pivot == 'tail':
- shaft_dt -= length
- elif pivot == 'middle':
- shaft_dt -= length / 2
- XYZ = np.column_stack(input_args[:3])
- UVW = np.column_stack(input_args[3:]).astype(float)
- # Normalize rows of UVW
- norm = np.linalg.norm(UVW, axis=1)
- # If any row of UVW is all zeros, don't make a quiver for it
- mask = norm > 0
- XYZ = XYZ[mask]
- if normalize:
- UVW = UVW[mask] / norm[mask].reshape((-1, 1))
- else:
- UVW = UVW[mask]
- if len(XYZ) > 0:
- # compute the shaft lines all at once with an outer product
- shafts = (XYZ - np.multiply.outer(shaft_dt, UVW)).swapaxes(0, 1)
- # compute head direction vectors, n heads x 2 sides x 3 dimensions
- head_dirs = calc_arrows(UVW)
- # compute all head lines at once, starting from the shaft ends
- heads = shafts[:, :1] - np.multiply.outer(arrow_dt, head_dirs)
- # stack left and right head lines together
- heads = heads.reshape((len(arrow_dt), -1, 3))
- # transpose to get a list of lines
- heads = heads.swapaxes(0, 1)
- lines = [*shafts, *heads]
- else:
- lines = []
- linec = art3d.Line3DCollection(lines, **kwargs)
- self.add_collection(linec)
- self.auto_scale_xyz(XYZ[:, 0], XYZ[:, 1], XYZ[:, 2], had_data)
- return linec
- quiver3D = quiver
- def voxels(self, *args, facecolors=None, edgecolors=None, shade=True,
- lightsource=None, **kwargs):
- """
- ax.voxels([x, y, z,] /, filled, facecolors=None, edgecolors=None, \
- **kwargs)
- Plot a set of filled voxels
- All voxels are plotted as 1x1x1 cubes on the axis, with
- ``filled[0, 0, 0]`` placed with its lower corner at the origin.
- Occluded faces are not plotted.
- Parameters
- ----------
- filled : 3D np.array of bool
- A 3D array of values, with truthy values indicating which voxels
- to fill
- x, y, z : 3D np.array, optional
- The coordinates of the corners of the voxels. This should broadcast
- to a shape one larger in every dimension than the shape of
- *filled*. These can be used to plot non-cubic voxels.
- If not specified, defaults to increasing integers along each axis,
- like those returned by :func:`~numpy.indices`.
- As indicated by the ``/`` in the function signature, these
- arguments can only be passed positionally.
- facecolors, edgecolors : array-like, optional
- The color to draw the faces and edges of the voxels. Can only be
- passed as keyword arguments.
- These parameters can be:
- - A single color value, to color all voxels the same color. This
- can be either a string, or a 1D RGB/RGBA array
- - ``None``, the default, to use a single color for the faces, and
- the style default for the edges.
- - A 3D `~numpy.ndarray` of color names, with each item the color
- for the corresponding voxel. The size must match the voxels.
- - A 4D `~numpy.ndarray` of RGB/RGBA data, with the components
- along the last axis.
- shade : bool, default: True
- Whether to shade the facecolors.
- lightsource : `~matplotlib.colors.LightSource`
- The lightsource to use when *shade* is True.
- **kwargs
- Additional keyword arguments to pass onto
- `~mpl_toolkits.mplot3d.art3d.Poly3DCollection`.
- Returns
- -------
- faces : dict
- A dictionary indexed by coordinate, where ``faces[i, j, k]`` is a
- `.Poly3DCollection` of the faces drawn for the voxel
- ``filled[i, j, k]``. If no faces were drawn for a given voxel,
- either because it was not asked to be drawn, or it is fully
- occluded, then ``(i, j, k) not in faces``.
- Examples
- --------
- .. plot:: gallery/mplot3d/voxels.py
- .. plot:: gallery/mplot3d/voxels_rgb.py
- .. plot:: gallery/mplot3d/voxels_torus.py
- .. plot:: gallery/mplot3d/voxels_numpy_logo.py
- """
- # work out which signature we should be using, and use it to parse
- # the arguments. Name must be voxels for the correct error message
- if len(args) >= 3:
- # underscores indicate position only
- def voxels(__x, __y, __z, filled, **kwargs):
- return (__x, __y, __z), filled, kwargs
- else:
- def voxels(filled, **kwargs):
- return None, filled, kwargs
- xyz, filled, kwargs = voxels(*args, **kwargs)
- # check dimensions
- if filled.ndim != 3:
- raise ValueError("Argument filled must be 3-dimensional")
- size = np.array(filled.shape, dtype=np.intp)
- # check xyz coordinates, which are one larger than the filled shape
- coord_shape = tuple(size + 1)
- if xyz is None:
- x, y, z = np.indices(coord_shape)
- else:
- x, y, z = (np.broadcast_to(c, coord_shape) for c in xyz)
- def _broadcast_color_arg(color, name):
- if np.ndim(color) in (0, 1):
- # single color, like "red" or [1, 0, 0]
- return np.broadcast_to(color, filled.shape + np.shape(color))
- elif np.ndim(color) in (3, 4):
- # 3D array of strings, or 4D array with last axis rgb
- if np.shape(color)[:3] != filled.shape:
- raise ValueError(
- f"When multidimensional, {name} must match the shape "
- "of filled")
- return color
- else:
- raise ValueError(f"Invalid {name} argument")
- # broadcast and default on facecolors
- if facecolors is None:
- facecolors = self._get_patches_for_fill.get_next_color()
- facecolors = _broadcast_color_arg(facecolors, 'facecolors')
- # broadcast but no default on edgecolors
- edgecolors = _broadcast_color_arg(edgecolors, 'edgecolors')
- # scale to the full array, even if the data is only in the center
- self.auto_scale_xyz(x, y, z)
- # points lying on corners of a square
- square = np.array([
- [0, 0, 0],
- [1, 0, 0],
- [1, 1, 0],
- [0, 1, 0],
- ], dtype=np.intp)
- voxel_faces = defaultdict(list)
- def permutation_matrices(n):
- """Generate cyclic permutation matrices."""
- mat = np.eye(n, dtype=np.intp)
- for i in range(n):
- yield mat
- mat = np.roll(mat, 1, axis=0)
- # iterate over each of the YZ, ZX, and XY orientations, finding faces
- # to render
- for permute in permutation_matrices(3):
- # find the set of ranges to iterate over
- pc, qc, rc = permute.T.dot(size)
- pinds = np.arange(pc)
- qinds = np.arange(qc)
- rinds = np.arange(rc)
- square_rot_pos = square.dot(permute.T)
- square_rot_neg = square_rot_pos[::-1]
- # iterate within the current plane
- for p in pinds:
- for q in qinds:
- # iterate perpendicularly to the current plane, handling
- # boundaries. We only draw faces between a voxel and an
- # empty space, to avoid drawing internal faces.
- # draw lower faces
- p0 = permute.dot([p, q, 0])
- i0 = tuple(p0)
- if filled[i0]:
- voxel_faces[i0].append(p0 + square_rot_neg)
- # draw middle faces
- for r1, r2 in zip(rinds[:-1], rinds[1:]):
- p1 = permute.dot([p, q, r1])
- p2 = permute.dot([p, q, r2])
- i1 = tuple(p1)
- i2 = tuple(p2)
- if filled[i1] and not filled[i2]:
- voxel_faces[i1].append(p2 + square_rot_pos)
- elif not filled[i1] and filled[i2]:
- voxel_faces[i2].append(p2 + square_rot_neg)
- # draw upper faces
- pk = permute.dot([p, q, rc-1])
- pk2 = permute.dot([p, q, rc])
- ik = tuple(pk)
- if filled[ik]:
- voxel_faces[ik].append(pk2 + square_rot_pos)
- # iterate over the faces, and generate a Poly3DCollection for each
- # voxel
- polygons = {}
- for coord, faces_inds in voxel_faces.items():
- # convert indices into 3D positions
- if xyz is None:
- faces = faces_inds
- else:
- faces = []
- for face_inds in faces_inds:
- ind = face_inds[:, 0], face_inds[:, 1], face_inds[:, 2]
- face = np.empty(face_inds.shape)
- face[:, 0] = x[ind]
- face[:, 1] = y[ind]
- face[:, 2] = z[ind]
- faces.append(face)
- # shade the faces
- facecolor = facecolors[coord]
- edgecolor = edgecolors[coord]
- poly = art3d.Poly3DCollection(
- faces, facecolors=facecolor, edgecolors=edgecolor,
- shade=shade, lightsource=lightsource, **kwargs)
- self.add_collection3d(poly)
- polygons[coord] = poly
- return polygons
- @_preprocess_data(replace_names=["x", "y", "z", "xerr", "yerr", "zerr"])
- def errorbar(self, x, y, z, zerr=None, yerr=None, xerr=None, fmt='',
- barsabove=False, errorevery=1, ecolor=None, elinewidth=None,
- capsize=None, capthick=None, xlolims=False, xuplims=False,
- ylolims=False, yuplims=False, zlolims=False, zuplims=False,
- **kwargs):
- """
- Plot lines and/or markers with errorbars around them.
- *x*/*y*/*z* define the data locations, and *xerr*/*yerr*/*zerr* define
- the errorbar sizes. By default, this draws the data markers/lines as
- well the errorbars. Use fmt='none' to draw errorbars only.
- Parameters
- ----------
- x, y, z : float or array-like
- The data positions.
- xerr, yerr, zerr : float or array-like, shape (N,) or (2, N), optional
- The errorbar sizes:
- - scalar: Symmetric +/- values for all data points.
- - shape(N,): Symmetric +/-values for each data point.
- - shape(2, N): Separate - and + values for each bar. First row
- contains the lower errors, the second row contains the upper
- errors.
- - *None*: No errorbar.
- Note that all error arrays should have *positive* values.
- fmt : str, default: ''
- The format for the data points / data lines. See `.plot` for
- details.
- Use 'none' (case-insensitive) to plot errorbars without any data
- markers.
- ecolor : color, default: None
- The color of the errorbar lines. If None, use the color of the
- line connecting the markers.
- elinewidth : float, default: None
- The linewidth of the errorbar lines. If None, the linewidth of
- the current style is used.
- capsize : float, default: :rc:`errorbar.capsize`
- The length of the error bar caps in points.
- capthick : float, default: None
- An alias to the keyword argument *markeredgewidth* (a.k.a. *mew*).
- This setting is a more sensible name for the property that
- controls the thickness of the error bar cap in points. For
- backwards compatibility, if *mew* or *markeredgewidth* are given,
- then they will over-ride *capthick*. This may change in future
- releases.
- barsabove : bool, default: False
- If True, will plot the errorbars above the plot
- symbols. Default is below.
- xlolims, ylolims, zlolims : bool, default: False
- These arguments can be used to indicate that a value gives only
- lower limits. In that case a caret symbol is used to indicate
- this. *lims*-arguments may be scalars, or array-likes of the same
- length as the errors. To use limits with inverted axes,
- `~.Axes.set_xlim` or `~.Axes.set_ylim` must be called before
- `errorbar`. Note the tricky parameter names: setting e.g.
- *ylolims* to True means that the y-value is a *lower* limit of the
- True value, so, only an *upward*-pointing arrow will be drawn!
- xuplims, yuplims, zuplims : bool, default: False
- Same as above, but for controlling the upper limits.
- errorevery : int or (int, int), default: 1
- draws error bars on a subset of the data. *errorevery* =N draws
- error bars on the points (x[::N], y[::N], z[::N]).
- *errorevery* =(start, N) draws error bars on the points
- (x[start::N], y[start::N], z[start::N]). e.g. *errorevery* =(6, 3)
- adds error bars to the data at (x[6], x[9], x[12], x[15], ...).
- Used to avoid overlapping error bars when two series share x-axis
- values.
- Returns
- -------
- errlines : list
- List of `~mpl_toolkits.mplot3d.art3d.Line3DCollection` instances
- each containing an errorbar line.
- caplines : list
- List of `~mpl_toolkits.mplot3d.art3d.Line3D` instances each
- containing a capline object.
- limmarks : list
- List of `~mpl_toolkits.mplot3d.art3d.Line3D` instances each
- containing a marker with an upper or lower limit.
- Other Parameters
- ----------------
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- **kwargs
- All other keyword arguments for styling errorbar lines are passed
- `~mpl_toolkits.mplot3d.art3d.Line3DCollection`.
- Examples
- --------
- .. plot:: gallery/mplot3d/errorbar3d.py
- """
- had_data = self.has_data()
- kwargs = cbook.normalize_kwargs(kwargs, mlines.Line2D)
- # Drop anything that comes in as None to use the default instead.
- kwargs = {k: v for k, v in kwargs.items() if v is not None}
- kwargs.setdefault('zorder', 2)
- self._process_unit_info([("x", x), ("y", y), ("z", z)], kwargs,
- convert=False)
- # make sure all the args are iterable; use lists not arrays to
- # preserve units
- x = x if np.iterable(x) else [x]
- y = y if np.iterable(y) else [y]
- z = z if np.iterable(z) else [z]
- if not len(x) == len(y) == len(z):
- raise ValueError("'x', 'y', and 'z' must have the same size")
- everymask = self._errorevery_to_mask(x, errorevery)
- label = kwargs.pop("label", None)
- kwargs['label'] = '_nolegend_'
- # Create the main line and determine overall kwargs for child artists.
- # We avoid calling self.plot() directly, or self._get_lines(), because
- # that would call self._process_unit_info again, and do other indirect
- # data processing.
- (data_line, base_style), = self._get_lines._plot_args(
- self, (x, y) if fmt == '' else (x, y, fmt), kwargs, return_kwargs=True)
- art3d.line_2d_to_3d(data_line, zs=z)
- # Do this after creating `data_line` to avoid modifying `base_style`.
- if barsabove:
- data_line.set_zorder(kwargs['zorder'] - .1)
- else:
- data_line.set_zorder(kwargs['zorder'] + .1)
- # Add line to plot, or throw it away and use it to determine kwargs.
- if fmt.lower() != 'none':
- self.add_line(data_line)
- else:
- data_line = None
- # Remove alpha=0 color that _process_plot_format returns.
- base_style.pop('color')
- if 'color' not in base_style:
- base_style['color'] = 'C0'
- if ecolor is None:
- ecolor = base_style['color']
- # Eject any line-specific information from format string, as it's not
- # needed for bars or caps.
- for key in ['marker', 'markersize', 'markerfacecolor',
- 'markeredgewidth', 'markeredgecolor', 'markevery',
- 'linestyle', 'fillstyle', 'drawstyle', 'dash_capstyle',
- 'dash_joinstyle', 'solid_capstyle', 'solid_joinstyle']:
- base_style.pop(key, None)
- # Make the style dict for the line collections (the bars).
- eb_lines_style = {**base_style, 'color': ecolor}
- if elinewidth:
- eb_lines_style['linewidth'] = elinewidth
- elif 'linewidth' in kwargs:
- eb_lines_style['linewidth'] = kwargs['linewidth']
- for key in ('transform', 'alpha', 'zorder', 'rasterized'):
- if key in kwargs:
- eb_lines_style[key] = kwargs[key]
- # Make the style dict for caps (the "hats").
- eb_cap_style = {**base_style, 'linestyle': 'None'}
- if capsize is None:
- capsize = mpl.rcParams["errorbar.capsize"]
- if capsize > 0:
- eb_cap_style['markersize'] = 2. * capsize
- if capthick is not None:
- eb_cap_style['markeredgewidth'] = capthick
- eb_cap_style['color'] = ecolor
- def _apply_mask(arrays, mask):
- # Return, for each array in *arrays*, the elements for which *mask*
- # is True, without using fancy indexing.
- return [[*itertools.compress(array, mask)] for array in arrays]
- def _extract_errs(err, data, lomask, himask):
- # For separate +/- error values we need to unpack err
- if len(err.shape) == 2:
- low_err, high_err = err
- else:
- low_err, high_err = err, err
- lows = np.where(lomask | ~everymask, data, data - low_err)
- highs = np.where(himask | ~everymask, data, data + high_err)
- return lows, highs
- # collect drawn items while looping over the three coordinates
- errlines, caplines, limmarks = [], [], []
- # list of endpoint coordinates, used for auto-scaling
- coorderrs = []
- # define the markers used for errorbar caps and limits below
- # the dictionary key is mapped by the `i_xyz` helper dictionary
- capmarker = {0: '|', 1: '|', 2: '_'}
- i_xyz = {'x': 0, 'y': 1, 'z': 2}
- # Calculate marker size from points to quiver length. Because these are
- # not markers, and 3D Axes do not use the normal transform stack, this
- # is a bit involved. Since the quiver arrows will change size as the
- # scene is rotated, they are given a standard size based on viewing
- # them directly in planar form.
- quiversize = eb_cap_style.get('markersize',
- mpl.rcParams['lines.markersize']) ** 2
- quiversize *= self.figure.dpi / 72
- quiversize = self.transAxes.inverted().transform([
- (0, 0), (quiversize, quiversize)])
- quiversize = np.mean(np.diff(quiversize, axis=0))
- # quiversize is now in Axes coordinates, and to convert back to data
- # coordinates, we need to run it through the inverse 3D transform. For
- # consistency, this uses a fixed elevation, azimuth, and roll.
- with cbook._setattr_cm(self, elev=0, azim=0, roll=0):
- invM = np.linalg.inv(self.get_proj())
- # elev=azim=roll=0 produces the Y-Z plane, so quiversize in 2D 'x' is
- # 'y' in 3D, hence the 1 index.
- quiversize = np.dot(invM, [quiversize, 0, 0, 0])[1]
- # Quivers use a fixed 15-degree arrow head, so scale up the length so
- # that the size corresponds to the base. In other words, this constant
- # corresponds to the equation tan(15) = (base / 2) / (arrow length).
- quiversize *= 1.8660254037844388
- eb_quiver_style = {**eb_cap_style,
- 'length': quiversize, 'arrow_length_ratio': 1}
- eb_quiver_style.pop('markersize', None)
- # loop over x-, y-, and z-direction and draw relevant elements
- for zdir, data, err, lolims, uplims in zip(
- ['x', 'y', 'z'], [x, y, z], [xerr, yerr, zerr],
- [xlolims, ylolims, zlolims], [xuplims, yuplims, zuplims]):
- dir_vector = art3d.get_dir_vector(zdir)
- i_zdir = i_xyz[zdir]
- if err is None:
- continue
- if not np.iterable(err):
- err = [err] * len(data)
- err = np.atleast_1d(err)
- # arrays fine here, they are booleans and hence not units
- lolims = np.broadcast_to(lolims, len(data)).astype(bool)
- uplims = np.broadcast_to(uplims, len(data)).astype(bool)
- # a nested list structure that expands to (xl,xh),(yl,yh),(zl,zh),
- # where x/y/z and l/h correspond to dimensions and low/high
- # positions of errorbars in a dimension we're looping over
- coorderr = [
- _extract_errs(err * dir_vector[i], coord, lolims, uplims)
- for i, coord in enumerate([x, y, z])]
- (xl, xh), (yl, yh), (zl, zh) = coorderr
- # draws capmarkers - flat caps orthogonal to the error bars
- nolims = ~(lolims | uplims)
- if nolims.any() and capsize > 0:
- lo_caps_xyz = _apply_mask([xl, yl, zl], nolims & everymask)
- hi_caps_xyz = _apply_mask([xh, yh, zh], nolims & everymask)
- # setting '_' for z-caps and '|' for x- and y-caps;
- # these markers will rotate as the viewing angle changes
- cap_lo = art3d.Line3D(*lo_caps_xyz, ls='',
- marker=capmarker[i_zdir],
- **eb_cap_style)
- cap_hi = art3d.Line3D(*hi_caps_xyz, ls='',
- marker=capmarker[i_zdir],
- **eb_cap_style)
- self.add_line(cap_lo)
- self.add_line(cap_hi)
- caplines.append(cap_lo)
- caplines.append(cap_hi)
- if lolims.any():
- xh0, yh0, zh0 = _apply_mask([xh, yh, zh], lolims & everymask)
- self.quiver(xh0, yh0, zh0, *dir_vector, **eb_quiver_style)
- if uplims.any():
- xl0, yl0, zl0 = _apply_mask([xl, yl, zl], uplims & everymask)
- self.quiver(xl0, yl0, zl0, *-dir_vector, **eb_quiver_style)
- errline = art3d.Line3DCollection(np.array(coorderr).T,
- **eb_lines_style)
- self.add_collection(errline)
- errlines.append(errline)
- coorderrs.append(coorderr)
- coorderrs = np.array(coorderrs)
- def _digout_minmax(err_arr, coord_label):
- return (np.nanmin(err_arr[:, i_xyz[coord_label], :, :]),
- np.nanmax(err_arr[:, i_xyz[coord_label], :, :]))
- minx, maxx = _digout_minmax(coorderrs, 'x')
- miny, maxy = _digout_minmax(coorderrs, 'y')
- minz, maxz = _digout_minmax(coorderrs, 'z')
- self.auto_scale_xyz((minx, maxx), (miny, maxy), (minz, maxz), had_data)
- # Adapting errorbar containers for 3d case, assuming z-axis points "up"
- errorbar_container = mcontainer.ErrorbarContainer(
- (data_line, tuple(caplines), tuple(errlines)),
- has_xerr=(xerr is not None or yerr is not None),
- has_yerr=(zerr is not None),
- label=label)
- self.containers.append(errorbar_container)
- return errlines, caplines, limmarks
- @_api.make_keyword_only("3.8", "call_axes_locator")
- def get_tightbbox(self, renderer=None, call_axes_locator=True,
- bbox_extra_artists=None, *, for_layout_only=False):
- ret = super().get_tightbbox(renderer,
- call_axes_locator=call_axes_locator,
- bbox_extra_artists=bbox_extra_artists,
- for_layout_only=for_layout_only)
- batch = [ret]
- if self._axis3don:
- for axis in self._axis_map.values():
- if axis.get_visible():
- axis_bb = martist._get_tightbbox_for_layout_only(
- axis, renderer)
- if axis_bb:
- batch.append(axis_bb)
- return mtransforms.Bbox.union(batch)
- @_preprocess_data()
- def stem(self, x, y, z, *, linefmt='C0-', markerfmt='C0o', basefmt='C3-',
- bottom=0, label=None, orientation='z'):
- """
- Create a 3D stem plot.
- A stem plot draws lines perpendicular to a baseline, and places markers
- at the heads. By default, the baseline is defined by *x* and *y*, and
- stems are drawn vertically from *bottom* to *z*.
- Parameters
- ----------
- x, y, z : array-like
- The positions of the heads of the stems. The stems are drawn along
- the *orientation*-direction from the baseline at *bottom* (in the
- *orientation*-coordinate) to the heads. By default, the *x* and *y*
- positions are used for the baseline and *z* for the head position,
- but this can be changed by *orientation*.
- linefmt : str, default: 'C0-'
- A string defining the properties of the vertical lines. Usually,
- this will be a color or a color and a linestyle:
- ========= =============
- Character Line Style
- ========= =============
- ``'-'`` solid line
- ``'--'`` dashed line
- ``'-.'`` dash-dot line
- ``':'`` dotted line
- ========= =============
- Note: While it is technically possible to specify valid formats
- other than color or color and linestyle (e.g. 'rx' or '-.'), this
- is beyond the intention of the method and will most likely not
- result in a reasonable plot.
- markerfmt : str, default: 'C0o'
- A string defining the properties of the markers at the stem heads.
- basefmt : str, default: 'C3-'
- A format string defining the properties of the baseline.
- bottom : float, default: 0
- The position of the baseline, in *orientation*-coordinates.
- label : str, default: None
- The label to use for the stems in legends.
- orientation : {'x', 'y', 'z'}, default: 'z'
- The direction along which stems are drawn.
- data : indexable object, optional
- DATA_PARAMETER_PLACEHOLDER
- Returns
- -------
- `.StemContainer`
- The container may be treated like a tuple
- (*markerline*, *stemlines*, *baseline*)
- Examples
- --------
- .. plot:: gallery/mplot3d/stem3d_demo.py
- """
- from matplotlib.container import StemContainer
- had_data = self.has_data()
- _api.check_in_list(['x', 'y', 'z'], orientation=orientation)
- xlim = (np.min(x), np.max(x))
- ylim = (np.min(y), np.max(y))
- zlim = (np.min(z), np.max(z))
- # Determine the appropriate plane for the baseline and the direction of
- # stemlines based on the value of orientation.
- if orientation == 'x':
- basex, basexlim = y, ylim
- basey, baseylim = z, zlim
- lines = [[(bottom, thisy, thisz), (thisx, thisy, thisz)]
- for thisx, thisy, thisz in zip(x, y, z)]
- elif orientation == 'y':
- basex, basexlim = x, xlim
- basey, baseylim = z, zlim
- lines = [[(thisx, bottom, thisz), (thisx, thisy, thisz)]
- for thisx, thisy, thisz in zip(x, y, z)]
- else:
- basex, basexlim = x, xlim
- basey, baseylim = y, ylim
- lines = [[(thisx, thisy, bottom), (thisx, thisy, thisz)]
- for thisx, thisy, thisz in zip(x, y, z)]
- # Determine style for stem lines.
- linestyle, linemarker, linecolor = _process_plot_format(linefmt)
- if linestyle is None:
- linestyle = mpl.rcParams['lines.linestyle']
- # Plot everything in required order.
- baseline, = self.plot(basex, basey, basefmt, zs=bottom,
- zdir=orientation, label='_nolegend_')
- stemlines = art3d.Line3DCollection(
- lines, linestyles=linestyle, colors=linecolor, label='_nolegend_')
- self.add_collection(stemlines)
- markerline, = self.plot(x, y, z, markerfmt, label='_nolegend_')
- stem_container = StemContainer((markerline, stemlines, baseline),
- label=label)
- self.add_container(stem_container)
- jx, jy, jz = art3d.juggle_axes(basexlim, baseylim, [bottom, bottom],
- orientation)
- self.auto_scale_xyz([*jx, *xlim], [*jy, *ylim], [*jz, *zlim], had_data)
- return stem_container
- stem3D = stem
- def get_test_data(delta=0.05):
- """Return a tuple X, Y, Z with a test data set."""
- x = y = np.arange(-3.0, 3.0, delta)
- X, Y = np.meshgrid(x, y)
- Z1 = np.exp(-(X**2 + Y**2) / 2) / (2 * np.pi)
- Z2 = (np.exp(-(((X - 1) / 1.5)**2 + ((Y - 1) / 0.5)**2) / 2) /
- (2 * np.pi * 0.5 * 1.5))
- Z = Z2 - Z1
- X = X * 10
- Y = Y * 10
- Z = Z * 500
- return X, Y, Z
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